contig: FAM19038-p1-1.1_scf1 genome: FAM19038-p1-1.1
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998

Metadata

Contig type Scaffold
Is Circular Yes
Is Plasmid No
GC-content 68.7 %
Length 2999408 bp
Gene count 2686

Genes on this contig

Gene ID Product Gene code Start ↑ End Length Strand
FAM19038-p1-1.1_002400 tRNA-Cys 2681762 2681832 70 forward
FAM19038-p1-1.1_002401 tRNA-Val 2681834 2681908 74 forward
FAM19038-p1-1.1_002402 cobalamin biosynthesis protein CbiX 2682044 2682793 749 forward
FAM19038-p1-1.1_002403 peptide-methionine (R)-S-oxide reductase MsrB GC:msrB 2682911 2683342 431 forward
FAM19038-p1-1.1_002404 DUF3000 domain-containing protein 2683408 2684004 596 forward
FAM19038-p1-1.1_002405 ribonuclease D 2684001 2685263 1262 forward
FAM19038-p1-1.1_002406 1-deoxy-D-xylulose-5-phosphate synthase 2685168 2687174 2006 reverse
FAM19038-p1-1.1_002407 aconitate hydratase AcnA GC:acnA 2687283 2689964 2681 reverse
FAM19038-p1-1.1_002408 class I SAM-dependent RNA methyltransferase 2690125 2691300 1175 reverse
FAM19038-p1-1.1_002409 APC family permease 2691395 2693425 2030 reverse
FAM19038-p1-1.1_002410 TrkA family potassium uptake protein 2693545 2694192 647 forward
FAM19038-p1-1.1_002411 TrkA family potassium uptake protein 2694223 2694885 662 forward
FAM19038-p1-1.1_002412 OB-fold nucleic acid binding domain-containing protein 2694935 2695327 392 reverse
FAM19038-p1-1.1_002413 DUF3710 domain-containing protein 2695327 2696031 704 reverse
FAM19038-p1-1.1_002414 dUTP diphosphatase GC:dut 2696233 2696676 443 reverse
FAM19038-p1-1.1_002415 DUF3093 domain-containing protein 2696691 2697203 512 reverse
FAM19038-p1-1.1_002416 DUF4235 domain-containing protein 2697336 2697596 260 forward
FAM19038-p1-1.1_002417 DUF4193 domain-containing protein 2697637 2697933 296 reverse
FAM19038-p1-1.1_002418 DUF3071 domain-containing protein 2698241 2699461 1220 forward
FAM19038-p1-1.1_002419 alkaline phosphatase family protein 2699519 2700580 1061 reverse
FAM19038-p1-1.1_002420 DUF2183 domain-containing protein 2700886 2701971 1085 forward
FAM19038-p1-1.1_002421 DNA topoisomerase IV subunit A 2702105 2704720 2615 forward
FAM19038-p1-1.1_002422 carbonic anhydrase 2704805 2705290 485 forward
FAM19038-p1-1.1_002423 hypothetical protein 2705310 2706758 1448 forward
FAM19038-p1-1.1_002424 MFS transporter 2706866 2708254 1388 reverse
FAM19038-p1-1.1_002425 type IIA DNA topoisomerase subunit B 2708324 2710429 2105 reverse
FAM19038-p1-1.1_002426 hypothetical protein 2710721 2710918 197 forward
FAM19038-p1-1.1_002427 GNAT family N-acetyltransferase 2710978 2711532 554 reverse
FAM19038-p1-1.1_002428 family 20 glycosylhydrolase 2711589 2712119 530 reverse
FAM19038-p1-1.1_002429 family 20 glycosylhydrolase GC:pseudo-gene 2712136 2712669 533 reverse
FAM19038-p1-1.1_002430 RNA polymerase sigma factor 2712764 2714329 1565 reverse
FAM19038-p1-1.1_002431 sigma-70 family RNA polymerase sigma factor 2714636 2715574 938 forward
FAM19038-p1-1.1_002432 acyl-CoA thioesterase II 2715684 2716541 857 reverse
FAM19038-p1-1.1_002433 1-3-beta-galactosyl-N-acetylhexosamine phosphorylase GC:gnpA 2716554 2718788 2234 reverse
FAM19038-p1-1.1_002434 ATP-dependent RNA helicase HrpA GC:hrpA 2718901 2722914 4013 reverse
FAM19038-p1-1.1_002435 DUF1707 domain-containing protein 2722992 2723606 614 reverse
FAM19038-p1-1.1_002436 universal stress protein 2723736 2724620 884 reverse
FAM19038-p1-1.1_002437 YbjN domain-containing protein 2724736 2725692 956 reverse
FAM19038-p1-1.1_002438 dCTP deaminase 2725749 2726330 581 reverse
FAM19038-p1-1.1_002439 vitamin B12-dependent ribonucleotide reductase 2726425 2729292 2867 reverse
FAM19038-p1-1.1_002440 transcriptional repressor NrdR GC:nrdR 2729434 2729949 515 reverse
FAM19038-p1-1.1_002441 hypothetical protein 2730080 2730367 287 reverse
FAM19038-p1-1.1_002442 ATP-dependent DNA helicase 2730674 2732680 2006 reverse
FAM19038-p1-1.1_002443 GTPase HflX GC:hflX 2732677 2734173 1496 reverse
FAM19038-p1-1.1_002444 diaminopimelate epimerase 2734277 2735107 830 reverse
FAM19038-p1-1.1_002445 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA GC:miaA 2735189 2736112 923 reverse
FAM19038-p1-1.1_002446 antitoxin 2736253 2736453 200 forward
FAM19038-p1-1.1_002447 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB GC:miaB 2736633 2738123 1490 reverse
FAM19038-p1-1.1_002448 aldose 1-epimerase family protein 2738217 2739125 908 forward
FAM19038-p1-1.1_002449 ribonuclease Y GC:rny 2739254 2740738 1484 reverse
FAM19038-p1-1.1_002450 regulatory protein RecX 2740880 2741422 542 reverse
FAM19038-p1-1.1_002451 recombinase RecA GC:recA 2741419 2742474 1055 reverse
FAM19038-p1-1.1_002452 DUF3046 domain-containing protein 2742710 2742904 194 reverse
FAM19038-p1-1.1_002453 DeoR/GlpR transcriptional regulator 2743125 2743883 758 forward
FAM19038-p1-1.1_002454 helix-turn-helix transcriptional regulator 2744006 2744281 275 reverse
FAM19038-p1-1.1_002455 CinA family protein 2744417 2744920 503 reverse
FAM19038-p1-1.1_002456 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GC:pgsA 2744910 2745509 599 reverse
FAM19038-p1-1.1_002457 30S ribosomal protein S12 methylthiotransferase RimO GC:rimO 2745586 2747010 1424 reverse
FAM19038-p1-1.1_002458 fructosamine kinase 2747072 2747869 797 forward
FAM19038-p1-1.1_002459 orotate phosphoribosyltransferase 2747892 2748542 650 reverse
FAM19038-p1-1.1_002460 orotidine-5'-phosphate decarboxylase GC:pyrF 2748648 2749358 710 reverse
FAM19038-p1-1.1_002461 dihydroorotate dehydrogenase 2749358 2750311 953 reverse
FAM19038-p1-1.1_002462 dihydroorotate dehydrogenase electron transfer subunit 2750392 2751279 887 reverse
FAM19038-p1-1.1_002463 carbamoyl-phosphate synthase large subunit GC:carB 2751284 2754472 3188 reverse
FAM19038-p1-1.1_002464 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit GC:carA 2754472 2755638 1166 reverse
FAM19038-p1-1.1_002465 dihydroorotase 2755635 2756978 1343 reverse
FAM19038-p1-1.1_002466 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR GC:pyrR 2756975 2757541 566 reverse
FAM19038-p1-1.1_002467 hypothetical protein 2757806 2758933 1127 forward
FAM19038-p1-1.1_002468 hypothetical protein 2758935 2759810 875 forward
FAM19038-p1-1.1_002469 GatB/YqeY domain-containing protein 2759820 2760281 461 reverse
FAM19038-p1-1.1_002470 L-glyceraldehyde 3-phosphate reductase GC:mgrA 2760335 2761345 1010 reverse
FAM19038-p1-1.1_002471 DUF3052 domain-containing protein 2761394 2761798 404 reverse
FAM19038-p1-1.1_002472 pyruvate dehydrogenase (acetyl-transferring)- homodimeric type GC:aceE 2761932 2764685 2753 reverse
FAM19038-p1-1.1_002473 PucR family transcriptional regulator 2764884 2766137 1253 forward
FAM19038-p1-1.1_002474 dinitrogenase iron-molybdenum cofactor 2766153 2766497 344 forward
FAM19038-p1-1.1_002475 2-dehydropantoate 2-reductase 2766497 2767408 911 forward
FAM19038-p1-1.1_002476 ACP S-malonyltransferase 2767536 2768471 935 forward
FAM19038-p1-1.1_002477 ketoacyl-ACP synthase III 2768471 2769484 1013 forward
FAM19038-p1-1.1_002478 acyl carrier protein 2769609 2769854 245 forward
FAM19038-p1-1.1_002479 beta-ketoacyl-[acyl-carrier-protein] synthase family protein 2769899 2771173 1274 forward
FAM19038-p1-1.1_002480 DUF3145 family protein 2771309 2771803 494 reverse
FAM19038-p1-1.1_002481 YggS family pyridoxal phosphate-dependent enzyme 2772033 2772737 704 reverse
FAM19038-p1-1.1_002482 VWA domain-containing protein 2772773 2773768 995 reverse
FAM19038-p1-1.1_002483 VWA domain-containing protein 2773786 2774757 971 reverse
FAM19038-p1-1.1_002484 DUF58 domain-containing protein 2774766 2775851 1085 reverse
FAM19038-p1-1.1_002485 MoxR family ATPase 2775860 2776942 1082 reverse
FAM19038-p1-1.1_002486 hypothetical protein 2777406 2778275 869 forward
FAM19038-p1-1.1_002487 HAD family hydrolase 2778278 2779108 830 forward
FAM19038-p1-1.1_002488 tRNA-Ile 2779139 2779212 73 forward
FAM19038-p1-1.1_002489 HAD family hydrolase 2779314 2779952 638 reverse
FAM19038-p1-1.1_002490 SH3 domain-containing protein 2780016 2781728 1712 reverse
FAM19038-p1-1.1_002491 hypothetical protein 2781826 2782215 389 forward
FAM19038-p1-1.1_002492 hypothetical protein 2782324 2782545 221 forward
FAM19038-p1-1.1_002493 serine/threonine protein kinase 2783184 2784617 1433 forward
FAM19038-p1-1.1_002494 hypothetical protein 2784614 2784958 344 forward
FAM19038-p1-1.1_002495 DNA-3-methyladenine glycosylase I 2784978 2785583 605 reverse
FAM19038-p1-1.1_002496 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT GC:pdxT 2785599 2786195 596 reverse
FAM19038-p1-1.1_002497 pyridoxal 5'-phosphate synthase lyase subunit PdxS GC:pdxS 2786189 2787097 908 reverse
FAM19038-p1-1.1_002498 PLP-dependent aminotransferase family protein 2787096 2788619 1523 forward
FAM19038-p1-1.1_002499 cysteine synthase A GC:cysK 2788626 2789561 935 reverse