contig: FAM19038-p1-1.1_scf1 genome: FAM19038-p1-1.1
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998

Metadata

Contig type Scaffold
Is Circular Yes
Is Plasmid No
GC-content 68.7 %
Length 2999408 bp
Gene count 2686

Genes on this contig

Gene ID Product Gene code Start ↑ End Length Strand
FAM19038-p1-1.1_002300 proteasome subunit alpha GC:prcA 2556343 2557029 686 reverse
FAM19038-p1-1.1_002301 proteasome subunit beta GC:prcB 2557109 2557927 818 reverse
FAM19038-p1-1.1_002302 DUF3054 domain-containing protein 2558137 2558517 380 forward
FAM19038-p1-1.1_002303 HAD-IA family hydrolase 2558534 2560138 1604 reverse
FAM19038-p1-1.1_002304 methionine synthase GC:metH 2560128 2563697 3569 reverse
FAM19038-p1-1.1_002305 PAC2 family protein 2563766 2564584 818 forward
FAM19038-p1-1.1_002306 ribulose-phosphate 3-epimerase GC:rpe 2564596 2565258 662 reverse
FAM19038-p1-1.1_002307 rRNA cytosine-C5-methylase 2565282 2566652 1370 reverse
FAM19038-p1-1.1_002308 methionyl-tRNA formyltransferase 2566655 2567581 926 reverse
FAM19038-p1-1.1_002309 primosomal protein N' 2567624 2569663 2039 reverse
FAM19038-p1-1.1_002310 carbon-nitrogen hydrolase family protein 2569673 2570512 839 reverse
FAM19038-p1-1.1_002311 Fpg/Nei family DNA glycosylase 2570577 2571449 872 reverse
FAM19038-p1-1.1_002312 ATP-dependent helicase 2571442 2576148 4706 reverse
FAM19038-p1-1.1_002313 methionine adenosyltransferase 2576194 2577414 1220 reverse
FAM19038-p1-1.1_002314 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC GC:coaBC 2577489 2578754 1265 reverse
FAM19038-p1-1.1_002315 DNA-directed RNA polymerase subunit omega 2578762 2579106 344 reverse
FAM19038-p1-1.1_002316 guanylate kinase GC:gmk 2579168 2579779 611 reverse
FAM19038-p1-1.1_002317 30S ribosomal protein S13 2579825 2580151 326 reverse
FAM19038-p1-1.1_002318 transcription antitermination factor NusB GC:nusB 2580258 2580782 524 reverse
FAM19038-p1-1.1_002319 elongation factor P GC:efp 2580893 2581462 569 reverse
FAM19038-p1-1.1_002320 pentapeptide repeat-containing protein 2581638 2582381 743 forward
FAM19038-p1-1.1_002321 3-dehydroquinate synthase 2582391 2583470 1079 reverse
FAM19038-p1-1.1_002322 shikimate kinase 2583467 2584018 551 reverse
FAM19038-p1-1.1_002323 chorismate synthase GC:aroC 2584065 2585267 1202 reverse
FAM19038-p1-1.1_002324 shikimate dehydrogenase 2585320 2586198 878 reverse
FAM19038-p1-1.1_002325 endolytic transglycosylase MltG GC:mltG 2586149 2587264 1115 reverse
FAM19038-p1-1.1_002326 Holliday junction resolvase RuvX GC:ruvX 2587261 2587707 446 reverse
FAM19038-p1-1.1_002327 alanine--tRNA ligase GC:alaS 2587722 2590403 2681 reverse
FAM19038-p1-1.1_002328 hypothetical protein 2590511 2590789 278 reverse
FAM19038-p1-1.1_002329 DUF948 domain-containing protein 2590786 2591190 404 reverse
FAM19038-p1-1.1_002330 replication-associated recombination protein A 2591232 2592614 1382 reverse
FAM19038-p1-1.1_002331 tyrosine-protein phosphatase 2592617 2593405 788 reverse
FAM19038-p1-1.1_002332 metallopeptidase family protein 2593494 2593838 344 reverse
FAM19038-p1-1.1_002333 aspartate--tRNA ligase GC:aspS 2593927 2595753 1826 reverse
FAM19038-p1-1.1_002334 glycosyltransferase family 1 protein 2595922 2596989 1067 reverse
FAM19038-p1-1.1_002335 helix-turn-helix transcriptional regulator 2597252 2597923 671 reverse
FAM19038-p1-1.1_002336 activase 2598009 2602373 4364 forward
FAM19038-p1-1.1_002337 cation transporter 2602453 2603679 1226 forward
FAM19038-p1-1.1_002338 DUF222 domain-containing protein 2604507 2605400 893 reverse
FAM19038-p1-1.1_002339 histidine--tRNA ligase 2605749 2607107 1358 reverse
FAM19038-p1-1.1_002340 MBL fold metallo-hydrolase 2607251 2607925 674 reverse
FAM19038-p1-1.1_002341 DUF349 domain-containing protein 2607918 2609201 1283 forward
FAM19038-p1-1.1_002342 threonine synthase 2609211 2610644 1433 reverse
FAM19038-p1-1.1_002343 bifunctional (p)ppGpp synthetase/guanosine-3'-5'-bis(diphosphate) 3'-pyrophosphohydrolase 2610722 2613046 2324 reverse
FAM19038-p1-1.1_002344 potassium channel family protein 2613101 2614186 1085 reverse
FAM19038-p1-1.1_002345 adenine phosphoribosyltransferase 2614200 2614736 536 reverse
FAM19038-p1-1.1_002346 protein translocase subunit SecF GC:secF 2614733 2615872 1139 reverse
FAM19038-p1-1.1_002347 protein translocase subunit SecD GC:secD 2615874 2617535 1661 reverse
FAM19038-p1-1.1_002348 preprotein translocase subunit YajC GC:yajC 2617670 2618131 461 reverse
FAM19038-p1-1.1_002349 Holliday junction branch migration DNA helicase RuvB GC:ruvB 2618240 2619283 1043 reverse
FAM19038-p1-1.1_002350 Holliday junction branch migration protein RuvA GC:ruvA 2619384 2619998 614 reverse
FAM19038-p1-1.1_002351 crossover junction endodeoxyribonuclease RuvC GC:ruvC 2619995 2620543 548 reverse
FAM19038-p1-1.1_002352 YebC/PmpR family DNA-binding transcriptional regulator 2620642 2621439 797 reverse
FAM19038-p1-1.1_002353 bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase PriA GC:priA 2621607 2622350 743 reverse
FAM19038-p1-1.1_002354 imidazole glycerol phosphate synthase subunit HisH GC:hisH 2622441 2623067 626 reverse
FAM19038-p1-1.1_002355 imidazoleglycerol-phosphate dehydratase HisB GC:hisB 2623159 2623779 620 reverse
FAM19038-p1-1.1_002356 histidinol-phosphate transaminase 2623776 2624975 1199 reverse
FAM19038-p1-1.1_002357 histidinol dehydrogenase GC:hisD 2624972 2626276 1304 reverse
FAM19038-p1-1.1_002358 hypothetical protein GC:pseudo-gene 2626379 2626894 515 reverse
FAM19038-p1-1.1_002359 DNA polymerase III subunit alpha GC:dnaE 2626970 2630542 3572 reverse
FAM19038-p1-1.1_002360 hypothetical protein 2630631 2631320 689 forward
FAM19038-p1-1.1_002361 hypothetical protein 2631298 2631639 341 reverse
FAM19038-p1-1.1_002362 glutamate synthase subunit beta 2631727 2633196 1469 reverse
FAM19038-p1-1.1_002363 glutamate synthase large subunit GC:gltB 2633189 2637709 4520 reverse
FAM19038-p1-1.1_002364 prolipoprotein diacylglyceryl transferase 2637896 2638801 905 reverse
FAM19038-p1-1.1_002365 tryptophan synthase subunit alpha 2638798 2639643 845 reverse
FAM19038-p1-1.1_002366 tryptophan synthase subunit beta GC:trpB 2639640 2640926 1286 reverse
FAM19038-p1-1.1_002367 indole-3-glycerol phosphate synthase TrpC GC:trpC 2640994 2641875 881 reverse
FAM19038-p1-1.1_002368 hypothetical protein 2641886 2642077 191 reverse
FAM19038-p1-1.1_002369 Trp biosynthesis-associated membrane protein 2642248 2642874 626 reverse
FAM19038-p1-1.1_002370 anthranilate synthase component I 2642879 2644402 1523 reverse
FAM19038-p1-1.1_002371 phosphoribosyl-AMP cyclohydrolase GC:hisI 2644465 2644824 359 reverse
FAM19038-p1-1.1_002372 TIGR03085 family protein 2644951 2645595 644 forward
FAM19038-p1-1.1_002373 N-acetylmuramoyl-L-alanine amidase 2645706 2647643 1937 reverse
FAM19038-p1-1.1_002374 purine permease 2647832 2649178 1346 reverse
FAM19038-p1-1.1_002375 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB GC:gatB 2649312 2650817 1505 reverse
FAM19038-p1-1.1_002376 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA GC:gatA 2650814 2652361 1547 reverse
FAM19038-p1-1.1_002377 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC GC:gatC 2652388 2652723 335 reverse
FAM19038-p1-1.1_002378 amino acid-binding protein 2652874 2653485 611 forward
FAM19038-p1-1.1_002379 VTT domain-containing protein 2653499 2654026 527 forward
FAM19038-p1-1.1_002380 ABC transporter substrate-binding protein 2654055 2655098 1043 reverse
FAM19038-p1-1.1_002381 ABC transporter permease 2655095 2655865 770 reverse
FAM19038-p1-1.1_002382 ABC transporter ATP-binding protein 2655862 2656707 845 reverse
FAM19038-p1-1.1_002383 hypothetical protein 2656862 2657068 206 reverse
FAM19038-p1-1.1_002384 methionine synthase 2657100 2658128 1028 reverse
FAM19038-p1-1.1_002385 tRNA 2-thiouridine(34) synthase MnmA GC:mnmA 2658125 2659231 1106 reverse
FAM19038-p1-1.1_002386 cysteine desulfurase 2659291 2660493 1202 reverse
FAM19038-p1-1.1_002387 glycogen debranching protein GlgX GC:glgX 2660703 2662898 2195 forward
FAM19038-p1-1.1_002388 glycosyltransferase family 1 protein 2663061 2665613 2552 reverse
FAM19038-p1-1.1_002389 alpha-1-4-glucan--maltose-1-phosphate maltosyltransferase 2666055 2668031 1976 forward
FAM19038-p1-1.1_002390 phosphotransferase 2668046 2669386 1340 forward
FAM19038-p1-1.1_002391 1-4-alpha-glucan branching protein GlgB GC:glgB 2669388 2671328 1940 forward
FAM19038-p1-1.1_002392 PTS transporter subunit EIIC 2671434 2673551 2117 forward
FAM19038-p1-1.1_002393 glycoside hydrolase family 65 protein 2673713 2676253 2540 reverse
FAM19038-p1-1.1_002394 beta-phosphoglucomutase family hydrolase 2676292 2677005 713 reverse
FAM19038-p1-1.1_002395 tetratricopeptide repeat protein 2677078 2678010 932 reverse
FAM19038-p1-1.1_002396 alpha-D-glucose phosphate-specific phosphoglucomutase 2678113 2679741 1628 forward
FAM19038-p1-1.1_002397 glycoside hydrolase family 32 protein 2679845 2681224 1379 forward
FAM19038-p1-1.1_002398 tRNA-Val 2681398 2681472 74 reverse
FAM19038-p1-1.1_002399 tRNA-Gly 2681652 2681724 72 forward