contig: FAM19038-p1-1.1_scf1 genome: FAM19038-p1-1.1
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998

Metadata

Contig type Scaffold
Is Circular Yes
Is Plasmid No
GC-content 68.7 %
Length 2999408 bp
Gene count 2686

Genes on this contig

Gene ID Product Gene code Start ↑ End Length Strand
FAM19038-p1-1.1_002000 HAMP domain-containing histidine kinase 2231816 2232838 1022 reverse
FAM19038-p1-1.1_002001 response regulator transcription factor 2232835 2233497 662 reverse
FAM19038-p1-1.1_002002 undecaprenyl-diphosphate phosphatase 2233609 2234478 869 reverse
FAM19038-p1-1.1_002003 phosphatase PAP2 family protein 2234628 2235449 821 forward
FAM19038-p1-1.1_002004 ABC transporter permease 2235446 2236204 758 forward
FAM19038-p1-1.1_002005 IS110 family transposase 2236412 2237647 1235 reverse
FAM19038-p1-1.1_002006 ISL3 family transposase GC:pseudo-gene 2237984 2239279 1295 forward
FAM19038-p1-1.1_002007 IS110 family transposase 2239513 2240748 1235 forward
FAM19038-p1-1.1_002008 hypothetical protein 2241331 2242329 998 reverse
FAM19038-p1-1.1_002009 hypothetical protein 2242732 2243235 503 reverse
FAM19038-p1-1.1_002010 IS1634 family transposase 2243718 2245361 1643 reverse
FAM19038-p1-1.1_002011 tRNA-Leu 2246016 2246101 85 reverse
FAM19038-p1-1.1_002012 M20/M25/M40 family metallo-hydrolase 2246236 2247588 1352 forward
FAM19038-p1-1.1_002013 citrate synthase 2247591 2248886 1295 forward
FAM19038-p1-1.1_002014 aldo/keto reductase 2248926 2249885 959 reverse
FAM19038-p1-1.1_002015 DUF3090 family protein 2249994 2250575 581 forward
FAM19038-p1-1.1_002016 nicotinamide mononucleotide transporter 2250726 2251412 686 forward
FAM19038-p1-1.1_002017 phosphoribosyl-ATP diphosphatase 2251555 2251821 266 forward
FAM19038-p1-1.1_002018 ATP phosphoribosyltransferase 2251802 2252698 896 forward
FAM19038-p1-1.1_002019 hypothetical protein 2252849 2253367 518 reverse
FAM19038-p1-1.1_002020 SseB family protein 2253406 2253948 542 forward
FAM19038-p1-1.1_002021 16S ribosomal RNA 2254847 2256385 1538 forward
FAM19038-p1-1.1_002022 23S ribosomal RNA 2256702 2259803 3101 forward
FAM19038-p1-1.1_002023 5S ribosomal RNA GC:rrf 2259968 2260084 116 forward
FAM19038-p1-1.1_002024 hypothetical protein 2260650 2261201 551 forward
FAM19038-p1-1.1_002025 hypothetical protein GC:pseudo-gene 2261165 2261839 674 forward
FAM19038-p1-1.1_002026 HAD-IIA family hydrolase 2262022 2263038 1016 forward
FAM19038-p1-1.1_002027 biotin transporter BioY 2263120 2263860 740 forward
FAM19038-p1-1.1_002028 ABC transporter ATP-binding protein 2263853 2264584 731 forward
FAM19038-p1-1.1_002029 energy-coupling factor transporter transmembrane protein EcfT 2264650 2265234 584 forward
FAM19038-p1-1.1_002030 NAD kinase 2265364 2266281 917 forward
FAM19038-p1-1.1_002031 DNA repair protein RecN GC:recN 2266278 2267981 1703 forward
FAM19038-p1-1.1_002032 CTP synthase 2268102 2269820 1718 forward
FAM19038-p1-1.1_002033 NUDIX hydrolase 2269817 2270500 683 forward
FAM19038-p1-1.1_002034 site-specific tyrosine recombinase XerD 2270497 2271480 983 forward
FAM19038-p1-1.1_002035 AAA family ATPase 2271538 2272458 920 forward
FAM19038-p1-1.1_002036 hypothetical protein 2272443 2272919 476 forward
FAM19038-p1-1.1_002037 rRNA pseudouridine synthase 2272947 2273687 740 forward
FAM19038-p1-1.1_002038 peptidylprolyl isomerase 2273793 2274845 1052 forward
FAM19038-p1-1.1_002039 tRNA glutamyl-Q(34) synthetase GluQRS 2274806 2275882 1076 reverse
FAM19038-p1-1.1_002040 WYL domain-containing protein 2276018 2277013 995 forward
FAM19038-p1-1.1_002041 WYL domain-containing protein 2277010 2277993 983 forward
FAM19038-p1-1.1_002042 hypothetical protein 2277996 2278214 218 forward
FAM19038-p1-1.1_002043 Sec-independent protein translocase TatA GC:pseudo-gene 2278290 2278460 170 forward
FAM19038-p1-1.1_002044 twin-arginine translocase subunit TatC GC:tatC 2278675 2279460 785 forward
FAM19038-p1-1.1_002045 diacylglycerol kinase family lipid kinase 2279505 2280437 932 forward
FAM19038-p1-1.1_002046 DEAD/DEAH box helicase 2280522 2283290 2768 forward
FAM19038-p1-1.1_002047 imidazole glycerol phosphate synthase subunit HisF GC:hisF 2283320 2284081 761 forward
FAM19038-p1-1.1_002048 HIT family protein 2284171 2284566 395 forward
FAM19038-p1-1.1_002049 acetolactate synthase large subunit 2284907 2286715 1808 forward
FAM19038-p1-1.1_002050 acetolactate synthase small subunit GC:ilvN 2286721 2287239 518 forward
FAM19038-p1-1.1_002051 ketol-acid reductoisomerase GC:ilvC 2287298 2288326 1028 forward
FAM19038-p1-1.1_002052 SAM-dependent methyltransferase 2288392 2288961 569 reverse
FAM19038-p1-1.1_002053 3-isopropylmalate dehydrogenase 2289076 2290161 1085 reverse
FAM19038-p1-1.1_002054 branched-chain amino acid aminotransferase 2290250 2291341 1091 forward
FAM19038-p1-1.1_002055 citramalate synthase 2291350 2292966 1616 forward
FAM19038-p1-1.1_002056 thymidine phosphorylase 2292982 2294256 1274 reverse
FAM19038-p1-1.1_002057 fumarylacetoacetate hydrolase family protein 2294292 2295092 800 forward
FAM19038-p1-1.1_002058 CPBP family intramembrane metalloprotease 2295099 2296214 1115 forward
FAM19038-p1-1.1_002059 tRNA-Gln 2296263 2296334 71 forward
FAM19038-p1-1.1_002060 tRNA-Glu 2296537 2296609 72 forward
FAM19038-p1-1.1_002061 IclR family transcriptional regulator 2296734 2297453 719 reverse
FAM19038-p1-1.1_002062 3-isopropylmalate dehydratase large subunit GC:leuC 2297546 2298961 1415 forward
FAM19038-p1-1.1_002063 3-isopropylmalate dehydratase small subunit GC:leuD 2298965 2299570 605 forward
FAM19038-p1-1.1_002064 1-acyl-sn-glycerol-3-phosphate acyltransferase 2299623 2300387 764 forward
FAM19038-p1-1.1_002065 D-alanine--D-alanine ligase 2300418 2301614 1196 forward
FAM19038-p1-1.1_002066 DUF3515 domain-containing protein 2301629 2302126 497 reverse
FAM19038-p1-1.1_002067 thiamine-phosphate kinase 2302187 2303146 959 forward
FAM19038-p1-1.1_002068 DNA translocase FtsK 2303465 2305849 2384 forward
FAM19038-p1-1.1_002069 DUF805 domain-containing protein 2306014 2306907 893 reverse
FAM19038-p1-1.1_002070 DUF805 domain-containing protein 2307011 2307580 569 reverse
FAM19038-p1-1.1_002071 tRNA-Val 2307678 2307751 73 reverse
FAM19038-p1-1.1_002072 peptide chain release factor 2 GC:prfB 2307863 2308969 1106 forward
FAM19038-p1-1.1_002073 cell division ATP-binding protein FtsE GC:ftsE 2309146 2309832 686 forward
FAM19038-p1-1.1_002074 ABC transporter permease 2309970 2310821 851 forward
FAM19038-p1-1.1_002075 SsrA-binding protein SmpB GC:smpB 2311108 2311590 482 forward
FAM19038-p1-1.1_002076 N-acetyl-gamma-glutamyl-phosphate reductase GC:argC 2311701 2312816 1115 forward
FAM19038-p1-1.1_002077 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ GC:argJ 2312864 2314030 1166 forward
FAM19038-p1-1.1_002078 acetylglutamate kinase GC:argB 2314027 2314977 950 forward
FAM19038-p1-1.1_002079 acetylornithine transaminase 2314970 2316202 1232 forward
FAM19038-p1-1.1_002080 ornithine carbamoyltransferase GC:argF 2316204 2317160 956 forward
FAM19038-p1-1.1_002081 argininosuccinate lyase GC:argH 2317160 2318623 1463 forward
FAM19038-p1-1.1_002082 DUF1707 and DUF4870 domain-containing protein 2318728 2319369 641 forward
FAM19038-p1-1.1_002083 transfer-messenger RNA GC:ssrA 2319492 2319860 368 forward
FAM19038-p1-1.1_002084 hypothetical protein 2319930 2320211 281 reverse
FAM19038-p1-1.1_002085 hypothetical protein 2320276 2320797 521 forward
FAM19038-p1-1.1_002086 N-acetyltransferase 2320853 2321428 575 forward
FAM19038-p1-1.1_002087 YqgE/AlgH family protein 2321463 2322035 572 forward
FAM19038-p1-1.1_002088 response regulator transcription factor 2322115 2322987 872 forward
FAM19038-p1-1.1_002089 HAMP domain-containing histidine kinase 2323089 2324588 1499 forward
FAM19038-p1-1.1_002090 hypothetical protein 2324585 2326360 1775 forward
FAM19038-p1-1.1_002091 ComF family protein 2326561 2327064 503 forward
FAM19038-p1-1.1_002092 ribosome-associated translation inhibitor RaiA GC:raiA 2327219 2327860 641 forward
FAM19038-p1-1.1_002093 winged helix-turn-helix domain-containing protein 2327881 2328909 1028 forward
FAM19038-p1-1.1_002094 preprotein translocase subunit SecA GC:secA 2329080 2331839 2759 forward
FAM19038-p1-1.1_002095 hypothetical protein 2331853 2332401 548 reverse
FAM19038-p1-1.1_002096 hypothetical protein 2332582 2333100 518 forward
FAM19038-p1-1.1_002097 DUF2505 domain-containing protein 2333173 2333655 482 reverse
FAM19038-p1-1.1_002098 NAD-glutamate dehydrogenase 2333802 2338493 4691 forward
FAM19038-p1-1.1_002099 PHP domain-containing protein 2338534 2339400 866 forward