contig: FAM19038-p1-1.1_scf1 genome: FAM19038-p1-1.1
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998

Metadata

Contig type Scaffold
Is Circular Yes
Is Plasmid No
GC-content 68.7 %
Length 2999408 bp
Gene count 2686

Genes on this contig

Gene ID Product Gene code Start ↑ End Length Strand
FAM19038-p1-1.1_002100 tryptophan--tRNA ligase GC:trpS 2339576 2340691 1115 forward
FAM19038-p1-1.1_002101 hypothetical protein 2340753 2341232 479 reverse
FAM19038-p1-1.1_002102 DEAD/DEAH box helicase 2341481 2343394 1913 reverse
FAM19038-p1-1.1_002103 hypothetical protein 2343607 2344290 683 forward
FAM19038-p1-1.1_002104 DUF3107 domain-containing protein 2344345 2344572 227 reverse
FAM19038-p1-1.1_002105 serine/threonine-protein phosphatase 2344586 2345524 938 reverse
FAM19038-p1-1.1_002106 cold-shock protein 2345700 2345906 206 reverse
FAM19038-p1-1.1_002107 ATP-dependent helicase 2346141 2349461 3320 forward
FAM19038-p1-1.1_002108 ATP-dependent helicase 2349458 2352682 3224 forward
FAM19038-p1-1.1_002109 hypothetical protein 2352865 2353590 725 forward
FAM19038-p1-1.1_002110 NAD(+) diphosphatase GC:nudC 2353697 2354671 974 forward
FAM19038-p1-1.1_002111 exodeoxyribonuclease V subunit alpha GC:recD 2354728 2356614 1886 reverse
FAM19038-p1-1.1_002112 UvrD-helicase domain-containing protein 2356607 2360071 3464 reverse
FAM19038-p1-1.1_002113 exodeoxyribonuclease V subunit gamma 2360068 2363388 3320 reverse
FAM19038-p1-1.1_002114 ATP-dependent DNA helicase UvrD2 2363346 2365649 2303 forward
FAM19038-p1-1.1_002115 hypothetical protein 2365670 2366461 791 reverse
FAM19038-p1-1.1_002116 M48 family metallopeptidase 2366792 2367448 656 forward
FAM19038-p1-1.1_002117 hydrolase 2367572 2368978 1406 reverse
FAM19038-p1-1.1_002118 PDZ domain-containing protein 2369118 2370275 1157 forward
FAM19038-p1-1.1_002119 hypothetical protein GC:pseudo-gene 2370374 2370919 545 forward
FAM19038-p1-1.1_002120 UPF0182 family protein 2371009 2373981 2972 forward
FAM19038-p1-1.1_002121 glycosyl hydrolase 2374045 2376477 2432 forward
FAM19038-p1-1.1_002122 tRNA-Met 2376613 2376686 73 reverse
FAM19038-p1-1.1_002123 tRNA-Met 2376831 2376904 73 reverse
FAM19038-p1-1.1_002124 M50 family metallopeptidase 2377008 2377751 743 forward
FAM19038-p1-1.1_002125 ABC transporter substrate-binding protein 2377958 2379451 1493 forward
FAM19038-p1-1.1_002126 ABC transporter permease 2379448 2380422 974 forward
FAM19038-p1-1.1_002127 ABC transporter permease 2380419 2381231 812 forward
FAM19038-p1-1.1_002128 ABC transporter ATP-binding protein 2381228 2382106 878 forward
FAM19038-p1-1.1_002129 ABC transporter ATP-binding protein 2382103 2382939 836 forward
FAM19038-p1-1.1_002130 phosphoglycerate dehydrogenase GC:serA 2383058 2384248 1190 forward
FAM19038-p1-1.1_002131 histidinol phosphatase 2384348 2385142 794 reverse
FAM19038-p1-1.1_002132 peptidase S10 2385172 2386653 1481 forward
FAM19038-p1-1.1_002133 ribosome small subunit-dependent GTPase A GC:rsgA 2386711 2387778 1067 reverse
FAM19038-p1-1.1_002134 3-phosphoshikimate 1-carboxyvinyltransferase GC:aroA 2387775 2389166 1391 reverse
FAM19038-p1-1.1_002135 DoxX family membrane protein 2389051 2389635 584 reverse
FAM19038-p1-1.1_002136 sigma-70 family RNA polymerase sigma factor 2389892 2390557 665 forward
FAM19038-p1-1.1_002137 mycothiol system anti-sigma-R factor 2390554 2390826 272 forward
FAM19038-p1-1.1_002138 histidine kinase 2391244 2392734 1490 forward
FAM19038-p1-1.1_002139 WhiB family transcriptional regulator 2392744 2392995 251 reverse
FAM19038-p1-1.1_002140 hypothetical protein 2393325 2393729 404 forward
FAM19038-p1-1.1_002141 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit 2393849 2397679 3830 reverse
FAM19038-p1-1.1_002142 DUF2029 domain-containing protein 2397783 2399021 1238 reverse
FAM19038-p1-1.1_002143 TIGR00730 family Rossman fold protein 2399256 2400317 1061 reverse
FAM19038-p1-1.1_002144 tRNA-Arg 2400364 2400435 71 reverse
FAM19038-p1-1.1_002145 diaminopimelate decarboxylase GC:lysA 2400567 2401991 1424 forward
FAM19038-p1-1.1_002146 homoserine dehydrogenase 2402089 2403453 1364 forward
FAM19038-p1-1.1_002147 homoserine kinase 2403458 2404420 962 forward
FAM19038-p1-1.1_002148 transcription termination factor Rho 2404705 2406702 1997 forward
FAM19038-p1-1.1_002149 50S ribosomal protein L31 GC:rpmE 2406878 2407096 218 forward
FAM19038-p1-1.1_002150 peptide chain release factor 1 GC:prfA 2407263 2408339 1076 forward
FAM19038-p1-1.1_002151 peptide chain release factor N(5)-glutamine methyltransferase GC:prmC 2408336 2409238 902 forward
FAM19038-p1-1.1_002152 threonylcarbamoyl-AMP synthase 2409235 2410077 842 forward
FAM19038-p1-1.1_002153 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 2410078 2411193 1115 forward
FAM19038-p1-1.1_002154 glycosyltransferase family 4 protein 2411327 2412562 1235 forward
FAM19038-p1-1.1_002155 lipopolysaccharide biosynthesis protein 2412559 2414022 1463 reverse
FAM19038-p1-1.1_002156 DUF4082 domain-containing protein 2414190 2415848 1658 reverse
FAM19038-p1-1.1_002157 glycosyltransferase 2416095 2417933 1838 forward
FAM19038-p1-1.1_002158 hypothetical protein 2418148 2419014 866 forward
FAM19038-p1-1.1_002159 hypothetical protein 2419082 2419750 668 forward
FAM19038-p1-1.1_002160 hypothetical protein 2419747 2420808 1061 forward
FAM19038-p1-1.1_002161 O-antigen ligase domain-containing protein 2420834 2422141 1307 forward
FAM19038-p1-1.1_002162 glycosyltransferase family 4 protein 2422183 2423568 1385 forward
FAM19038-p1-1.1_002163 glycosyltransferase family 1 protein 2423565 2424788 1223 forward
FAM19038-p1-1.1_002164 asparagine synthase (glutamine-hydrolyzing) GC:asnB 2424788 2426644 1856 forward
FAM19038-p1-1.1_002165 glycosyltransferase 2426641 2427993 1352 forward
FAM19038-p1-1.1_002166 PIG-L family deacetylase 2427935 2429527 1592 reverse
FAM19038-p1-1.1_002167 AMP-binding protein 2429687 2431189 1502 forward
FAM19038-p1-1.1_002168 hypothetical protein 2431186 2432019 833 forward
FAM19038-p1-1.1_002169 4'-phosphopantetheinyl transferase superfamily protein 2432031 2432426 395 forward
FAM19038-p1-1.1_002170 NAD(+) synthase GC:nadE 2432384 2433361 977 reverse
FAM19038-p1-1.1_002171 asparagine synthase (glutamine-hydrolyzing) GC:asnB 2433324 2435333 2009 reverse
FAM19038-p1-1.1_002172 acyl carrier protein 2435470 2435730 260 forward
FAM19038-p1-1.1_002173 serine acetyltransferase 2435746 2436339 593 forward
FAM19038-p1-1.1_002174 cyanate permease 2436740 2437078 338 forward
FAM19038-p1-1.1_002175 hypothetical protein 2437234 2437422 188 forward
FAM19038-p1-1.1_002176 F0F1 ATP synthase subunit A GC:atpB 2437419 2438201 782 forward
FAM19038-p1-1.1_002177 ATP synthase F0 subunit C GC:atpE 2438284 2438505 221 forward
FAM19038-p1-1.1_002178 F0F1 ATP synthase subunit B 2438529 2439092 563 forward
FAM19038-p1-1.1_002179 F0F1 ATP synthase subunit delta 2439089 2439904 815 forward
FAM19038-p1-1.1_002180 F0F1 ATP synthase subunit alpha 2439970 2441607 1637 forward
FAM19038-p1-1.1_002181 F0F1 ATP synthase subunit gamma 2441611 2442531 920 forward
FAM19038-p1-1.1_002182 F0F1 ATP synthase subunit beta GC:atpD 2442543 2444000 1457 forward
FAM19038-p1-1.1_002183 F0F1 ATP synthase subunit epsilon 2444000 2444422 422 forward
FAM19038-p1-1.1_002184 DUF2550 family protein 2444523 2445041 518 forward
FAM19038-p1-1.1_002185 cob(I)yrinic acid a-c-diamide adenosyltransferase 2445296 2445967 671 reverse
FAM19038-p1-1.1_002186 alpha/beta fold hydrolase 2446035 2446862 827 reverse
FAM19038-p1-1.1_002187 endonuclease NucS GC:nucS 2447228 2447941 713 forward
FAM19038-p1-1.1_002188 adhesin 2447985 2449370 1385 reverse
FAM19038-p1-1.1_002189 methylmalonyl-CoA epimerase GC:mce 2449660 2450121 461 reverse
FAM19038-p1-1.1_002190 hypothetical protein 2450295 2450486 191 forward
FAM19038-p1-1.1_002191 PH domain-containing protein 2450518 2451033 515 forward
FAM19038-p1-1.1_002192 polysaccharide deacetylase family protein 2451200 2452270 1070 forward
FAM19038-p1-1.1_002193 DUF1345 domain-containing protein GC:pseudo-gene 2452384 2453008 624 forward
FAM19038-p1-1.1_002194 hypothetical protein 2453281 2454351 1070 forward
FAM19038-p1-1.1_002195 IS256 family transposase 2454453 2455712 1259 forward
FAM19038-p1-1.1_002196 threonine--tRNA ligase 2456069 2458135 2066 forward
FAM19038-p1-1.1_002197 HIT domain-containing protein 2458139 2458714 575 forward
FAM19038-p1-1.1_002198 CDP-alcohol phosphatidyltransferase family protein 2458707 2459330 623 forward
FAM19038-p1-1.1_002199 phosphatidylinositol mannoside acyltransferase 2459327 2460286 959 forward