contig: FAM19038-p1-1.1_scf1 genome: FAM19038-p1-1.1
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998

Metadata

Contig type Scaffold
Is Circular Yes
Is Plasmid No
GC-content 68.7 %
Length 2999408 bp
Gene count 2686

Genes on this contig

Gene ID Product Gene code Start ↑ End Length Strand
FAM19038-p1-1.1_001201 ABC transporter permease 1372297 1373271 974 forward
FAM19038-p1-1.1_001202 D-ribose ABC transporter substrate-binding protein 1373346 1374299 953 forward
FAM19038-p1-1.1_001203 ribokinase 1374296 1375219 923 forward
FAM19038-p1-1.1_001204 D-ribose pyranase GC:rbsD 1375216 1375599 383 forward
FAM19038-p1-1.1_001205 Gfo/Idh/MocA family oxidoreductase 1375699 1376685 986 forward
FAM19038-p1-1.1_001206 hypothetical protein GC:pseudo-gene 1376690 1377313 623 forward
FAM19038-p1-1.1_001207 hypothetical protein 1377334 1377624 290 forward
FAM19038-p1-1.1_001208 hypothetical protein 1377602 1378939 1337 reverse
FAM19038-p1-1.1_001209 SIS domain-containing protein 1378953 1379828 875 reverse
FAM19038-p1-1.1_001210 hypothetical protein 1379739 1380449 710 forward
FAM19038-p1-1.1_001211 putative cation transport regulator ChaB GC:chaB 1380525 1380755 230 reverse
FAM19038-p1-1.1_001212 YihY/virulence factor BrkB family protein 1381217 1382308 1091 reverse
FAM19038-p1-1.1_001213 DUF4235 domain-containing protein 1382406 1382699 293 reverse
FAM19038-p1-1.1_001214 DUF3618 domain-containing protein 1382735 1383115 380 reverse
FAM19038-p1-1.1_001215 phage holin family protein 1383102 1383500 398 reverse
FAM19038-p1-1.1_001216 SDR family oxidoreductase 1383691 1384491 800 forward
FAM19038-p1-1.1_001217 FAD-dependent oxidoreductase 1384602 1385783 1181 reverse
FAM19038-p1-1.1_001218 hypothetical protein 1386320 1387273 953 forward
FAM19038-p1-1.1_001219 IS630 family transposase 1387620 1388735 1115 reverse
FAM19038-p1-1.1_001220 hypothetical protein 1388798 1389613 815 reverse
FAM19038-p1-1.1_001221 DEAD/DEAH box helicase 1389686 1394488 4802 reverse
FAM19038-p1-1.1_001222 reverse gyrase 1394889 1396217 1328 forward
FAM19038-p1-1.1_001223 IS1380 family transposase 1396542 1397882 1340 reverse
FAM19038-p1-1.1_001224 IS256 family transposase 1398030 1399298 1268 forward
FAM19038-p1-1.1_001225 hypothetical protein 1399532 1400077 545 reverse
FAM19038-p1-1.1_001226 MFS transporter 1400200 1401528 1328 forward
FAM19038-p1-1.1_001227 alpha/beta hydrolase 1402043 1403335 1292 forward
FAM19038-p1-1.1_001228 hypothetical protein 1403396 1404304 908 forward
FAM19038-p1-1.1_001229 HD domain-containing protein 1404340 1405077 737 forward
FAM19038-p1-1.1_001230 hypothetical protein 1405082 1406206 1124 reverse
FAM19038-p1-1.1_001231 ATPase 1406203 1409637 3434 reverse
FAM19038-p1-1.1_001232 DUF4194 domain-containing protein 1409634 1410392 758 reverse
FAM19038-p1-1.1_001233 DUF3375 domain-containing protein 1410376 1411875 1499 reverse
FAM19038-p1-1.1_001234 DNA polymerase III subunit epsilon 1412004 1412600 596 reverse
FAM19038-p1-1.1_001235 NAD-dependent protein deacylase 1412686 1413411 725 forward
FAM19038-p1-1.1_001236 hypothetical protein 1413661 1413897 236 reverse
FAM19038-p1-1.1_001237 sigma-70 family RNA polymerase sigma factor 1413992 1416778 2786 forward
FAM19038-p1-1.1_001238 nucleoside/nucleotide kinase family protein 1416741 1417358 617 reverse
FAM19038-p1-1.1_001239 GNAT family N-acetyltransferase 1417432 1417986 554 reverse
FAM19038-p1-1.1_001240 alpha/beta hydrolase 1418030 1419013 983 forward
FAM19038-p1-1.1_001241 IS256 family transposase 1419257 1420525 1268 reverse
FAM19038-p1-1.1_001242 FKBP-type peptidyl-prolyl cis-trans isomerase 1421049 1421414 365 reverse
FAM19038-p1-1.1_001243 peroxide stress protein YaaA 1421477 1422295 818 reverse
FAM19038-p1-1.1_001244 DUF2330 domain-containing protein 1422426 1423550 1124 forward
FAM19038-p1-1.1_001245 dipeptide ABC transporter ATP-binding protein 1423525 1424637 1112 reverse
FAM19038-p1-1.1_001246 ABC transporter ATP-binding protein 1424624 1425583 959 reverse
FAM19038-p1-1.1_001247 ABC transporter permease 1425673 1426674 1001 reverse
FAM19038-p1-1.1_001248 ABC transporter permease 1426667 1427590 923 reverse
FAM19038-p1-1.1_001249 ABC transporter substrate-binding protein 1427665 1429320 1655 reverse
FAM19038-p1-1.1_001250 hypothetical protein 1429527 1430090 563 reverse
FAM19038-p1-1.1_001251 MarR family transcriptional regulator GC:pseudo-gene 1430242 1430670 428 forward
FAM19038-p1-1.1_001252 AAA family ATPase 1431705 1432250 545 forward
FAM19038-p1-1.1_001253 hypothetical protein 1432243 1433220 977 forward
FAM19038-p1-1.1_001254 hypothetical protein 1433730 1434551 821 forward
FAM19038-p1-1.1_001255 IS630 family transposase 1434919 1435992 1073 reverse
FAM19038-p1-1.1_001256 IS1380 family transposase 1436225 1437613 1388 reverse
FAM19038-p1-1.1_001257 hypothetical protein 1437855 1438787 932 forward
FAM19038-p1-1.1_001258 hypothetical protein 1438975 1439886 911 forward
FAM19038-p1-1.1_001259 ISL3 family transposase 1440354 1441601 1247 forward
FAM19038-p1-1.1_001260 IS1634 family transposase GC:pseudo-gene 1441609 1442529 920 reverse
FAM19038-p1-1.1_001261 IS1380 family transposase 1442732 1444105 1373 forward
FAM19038-p1-1.1_001262 hypothetical protein GC:pseudo-gene 1444226 1444417 191 forward
FAM19038-p1-1.1_001263 tRNA-Pro 1444986 1445062 76 reverse
FAM19038-p1-1.1_001264 metallophosphoesterase 1445157 1446071 914 reverse
FAM19038-p1-1.1_001265 PASTA domain-containing protein 1446077 1448533 2456 reverse
FAM19038-p1-1.1_001266 WhiB family transcriptional regulator 1448723 1449031 308 forward
FAM19038-p1-1.1_001267 DUF4177 domain-containing protein 1449113 1449283 170 forward
FAM19038-p1-1.1_001268 RidA family protein 1449280 1449735 455 forward
FAM19038-p1-1.1_001269 Crp/Fnr family transcriptional regulator 1449792 1450496 704 reverse
FAM19038-p1-1.1_001270 endonuclease III GC:nth 1450757 1451410 653 forward
FAM19038-p1-1.1_001271 TlpA family protein disulfide reductase 1451407 1452129 722 forward
FAM19038-p1-1.1_001272 CoA pyrophosphatase 1452126 1452842 716 forward
FAM19038-p1-1.1_001273 phage holin family protein 1452861 1453331 470 reverse
FAM19038-p1-1.1_001274 class I SAM-dependent methyltransferase 1453418 1454176 758 reverse
FAM19038-p1-1.1_001275 pilus assembly protein CpaE 1454444 1455433 989 forward
FAM19038-p1-1.1_001276 TadA family conjugal transfer-associated ATPase 1455426 1456694 1268 forward
FAM19038-p1-1.1_001277 hypothetical protein 1457177 1457488 311 forward
FAM19038-p1-1.1_001278 type II secretion protein F 1457851 1458273 422 forward
FAM19038-p1-1.1_001279 DUF4244 domain-containing protein 1458611 1458877 266 forward
FAM19038-p1-1.1_001280 hypothetical protein 1458991 1459311 320 forward
FAM19038-p1-1.1_001281 flp pilus-assembly TadE/G-like family protein 1459308 1459715 407 forward
FAM19038-p1-1.1_001282 AAA family ATPase 1459818 1460993 1175 forward
FAM19038-p1-1.1_001283 DEAD/DEAH box helicase 1461010 1463295 2285 reverse
FAM19038-p1-1.1_001284 class I SAM-dependent methyltransferase 1463406 1464905 1499 forward
FAM19038-p1-1.1_001285 DUF2249 domain-containing protein 1464957 1465250 293 forward
FAM19038-p1-1.1_001286 type I DNA topoisomerase GC:topA 1465398 1468310 2912 forward
FAM19038-p1-1.1_001287 hypothetical protein 1468357 1469871 1514 forward
FAM19038-p1-1.1_001288 dTMP kinase GC:tmk 1469868 1470521 653 forward
FAM19038-p1-1.1_001289 DNA polymerase III subunit delta' 1470518 1471717 1199 forward
FAM19038-p1-1.1_001290 DoxX family protein 1471935 1472744 809 forward
FAM19038-p1-1.1_001291 hypothetical protein 1472788 1473606 818 forward
FAM19038-p1-1.1_001292 alpha/beta hydrolase 1473618 1475372 1754 forward
FAM19038-p1-1.1_001293 hypothetical protein 1475574 1475909 335 forward
FAM19038-p1-1.1_001294 DUF885 domain-containing protein 1475971 1477680 1709 reverse
FAM19038-p1-1.1_001295 tRNA-Thr 1477845 1477917 72 forward
FAM19038-p1-1.1_001296 hypothetical protein 1478090 1478239 149 reverse
FAM19038-p1-1.1_001297 DUF222 domain-containing protein 1478255 1480027 1772 forward
FAM19038-p1-1.1_001298 GNAT family N-acetyltransferase 1480221 1480814 593 forward
FAM19038-p1-1.1_001299 hypothetical protein 1480887 1483754 2867 forward
FAM19038-p1-1.1_001300 DUF1453 family protein 1483895 1484380 485 forward