contig: FAM19038-p1-1.1_scf1 genome: FAM19038-p1-1.1
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998

Metadata

Contig type Scaffold
Is Circular Yes
Is Plasmid No
GC-content 68.7 %
Length 2999408 bp
Gene count 2686

Genes on this contig

Gene ID Product Gene code Start ↑ End Length Strand
FAM19038-p1-1.1_001001 GntR family transcriptional regulator 1149321 1149707 386 reverse
FAM19038-p1-1.1_001002 lipoate--protein ligase family protein 1149873 1150934 1061 reverse
FAM19038-p1-1.1_001003 ABC transporter permease subunit 1151193 1153388 2195 forward
FAM19038-p1-1.1_001004 amino acid ABC transporter ATP-binding protein 1153385 1154134 749 forward
FAM19038-p1-1.1_001005 histidinol-phosphate transaminase GC:hisC 1154483 1155562 1079 forward
FAM19038-p1-1.1_001006 patatin family protein 1155624 1156505 881 reverse
FAM19038-p1-1.1_001007 IS5 family transposase GC:pseudo-gene 1156912 1157610 698 forward
FAM19038-p1-1.1_001008 transposase GC:pseudo-gene 1157610 1157981 371 reverse
FAM19038-p1-1.1_001009 IS256 family transposase GC:pseudo-gene 1158015 1159320 1305 reverse
FAM19038-p1-1.1_001010 ISL3 family transposase GC:pseudo-gene 1159455 1160420 965 reverse
FAM19038-p1-1.1_001011 sugar ABC transporter permease GC:pseudo-gene 1160543 1160779 236 forward
FAM19038-p1-1.1_001012 carbohydrate ABC transporter permease 1160776 1161669 893 forward
FAM19038-p1-1.1_001013 precorrin-8X methylmutase 1161890 1162543 653 reverse
FAM19038-p1-1.1_001014 energy-coupling factor ABC transporter permease 1162944 1163651 707 forward
FAM19038-p1-1.1_001015 energy-coupling factor ABC transporter substrate-binding protein 1163644 1164111 467 forward
FAM19038-p1-1.1_001016 cobalt ECF transporter T component CbiQ GC:cbiQ 1164108 1164911 803 forward
FAM19038-p1-1.1_001017 ATP-binding cassette domain-containing protein 1164908 1165750 842 forward
FAM19038-p1-1.1_001018 precorrin-6Y C5-15-methyltransferase (decarboxylating) subunit CbiT GC:cbiT 1165779 1166366 587 reverse
FAM19038-p1-1.1_001019 cob(I)yrinic acid a-c-diamide adenosyltransferase GC:cobO 1166648 1167262 614 forward
FAM19038-p1-1.1_001020 cobyrinate a-c-diamide synthase 1167280 1169964 2684 forward
FAM19038-p1-1.1_001021 uroporphyrinogen-III C-methyltransferase GC:cobA 1169961 1170752 791 forward
FAM19038-p1-1.1_001022 cobalt-precorrin-6A reductase 1170824 1171561 737 reverse
FAM19038-p1-1.1_001023 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase GC:cobT 1171873 1173033 1160 forward
FAM19038-p1-1.1_001024 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase GC:cobU 1173030 1173599 569 forward
FAM19038-p1-1.1_001025 adenosylcobinamide-GDP ribazoletransferase 1173596 1174441 845 forward
FAM19038-p1-1.1_001026 cobalamin-binding protein 1174490 1175263 773 forward
FAM19038-p1-1.1_001027 tRNA-Thr 1175352 1175427 75 forward
FAM19038-p1-1.1_001028 hypothetical protein 1175638 1175889 251 reverse
FAM19038-p1-1.1_001029 S-ribosylhomocysteine lyase 1176224 1176688 464 reverse
FAM19038-p1-1.1_001030 hypothetical protein 1176696 1177415 719 reverse
FAM19038-p1-1.1_001031 hypothetical protein 1177426 1178316 890 reverse
FAM19038-p1-1.1_001032 ATP-binding cassette domain-containing protein 1178313 1179173 860 reverse
FAM19038-p1-1.1_001033 hypothetical protein 1179191 1180006 815 reverse
FAM19038-p1-1.1_001034 RNA polymerase sigma factor 1180003 1180557 554 reverse
FAM19038-p1-1.1_001035 mannose-6-phosphate isomerase- class I GC:manA 1180651 1181853 1202 reverse
FAM19038-p1-1.1_001036 DUF3263 domain-containing protein 1181852 1182250 398 forward
FAM19038-p1-1.1_001037 AAA family ATPase 1182293 1183723 1430 reverse
FAM19038-p1-1.1_001038 tetratricopeptide repeat protein 1183979 1185049 1070 reverse
FAM19038-p1-1.1_001039 chaperonin GroEL GC:groL 1185563 1187203 1640 forward
FAM19038-p1-1.1_001040 aspartate carbamoyltransferase GC:pyrB 1187434 1188480 1046 forward
FAM19038-p1-1.1_001041 hypothetical protein 1188516 1188656 140 forward
FAM19038-p1-1.1_001042 C1 family peptidase 1188745 1190100 1355 reverse
FAM19038-p1-1.1_001043 suppressor of fused domain protein 1190335 1191018 683 forward
FAM19038-p1-1.1_001044 phosphomethylpyrimidine synthase ThiC GC:thiC 1191123 1192874 1751 reverse
FAM19038-p1-1.1_001045 class II fumarate hydratase GC:fumC 1193212 1194618 1406 reverse
FAM19038-p1-1.1_001046 hypothetical protein 1194669 1195499 830 reverse
FAM19038-p1-1.1_001047 chloride channel protein GC:pseudo-gene 1195562 1196862 1300 reverse
FAM19038-p1-1.1_001048 hypothetical protein 1197129 1197701 572 forward
FAM19038-p1-1.1_001049 flagellar biosynthesis protein FlgA 1198088 1198612 524 forward
FAM19038-p1-1.1_001050 hypothetical protein GC:pseudo-gene 1198612 1198860 248 forward
FAM19038-p1-1.1_001051 CpaF family protein 1199721 1201322 1601 forward
FAM19038-p1-1.1_001052 hypothetical protein 1201313 1202263 950 forward
FAM19038-p1-1.1_001053 hypothetical protein 1202316 1203218 902 forward
FAM19038-p1-1.1_001054 hypothetical protein 1203330 1203557 227 forward
FAM19038-p1-1.1_001055 hypothetical protein 1203611 1203922 311 forward
FAM19038-p1-1.1_001056 hypothetical protein 1203940 1204407 467 forward
FAM19038-p1-1.1_001057 LysM peptidoglycan-binding domain-containing protein 1204404 1207727 3323 forward
FAM19038-p1-1.1_001058 CoA-acylating methylmalonate-semialdehyde dehydrogenase 1207952 1209433 1481 forward
FAM19038-p1-1.1_001059 ketopantoate reductase family protein 1209775 1210746 971 reverse
FAM19038-p1-1.1_001060 MFS transporter 1211127 1212428 1301 reverse
FAM19038-p1-1.1_001061 fructose bisphosphate aldolase 1212475 1213359 884 forward
FAM19038-p1-1.1_001062 response regulator transcription factor 1213438 1214052 614 reverse
FAM19038-p1-1.1_001063 sensor histidine kinase 1214068 1215279 1211 reverse
FAM19038-p1-1.1_001064 ABC transporter permease 1215363 1216139 776 reverse
FAM19038-p1-1.1_001065 ABC transporter ATP-binding protein 1216136 1217128 992 reverse
FAM19038-p1-1.1_001066 formate--tetrahydrofolate ligase 1217279 1218976 1697 forward
FAM19038-p1-1.1_001067 hypothetical protein 1219006 1219401 395 forward
FAM19038-p1-1.1_001068 hypothetical protein 1219426 1219941 515 reverse
FAM19038-p1-1.1_001069 hypothetical protein 1219964 1220644 680 reverse
FAM19038-p1-1.1_001070 FtsX-like permease family protein 1220846 1223350 2504 reverse
FAM19038-p1-1.1_001071 ATP-binding cassette domain-containing protein 1223350 1224300 950 reverse
FAM19038-p1-1.1_001072 response regulator transcription factor 1224450 1225106 656 reverse
FAM19038-p1-1.1_001073 sensor histidine kinase 1225148 1226527 1379 reverse
FAM19038-p1-1.1_001074 UDP-glucose 4-epimerase GalE GC:galE 1226636 1227625 989 forward
FAM19038-p1-1.1_001075 hypothetical protein 1227648 1227803 155 forward
FAM19038-p1-1.1_001076 HAD hydrolase-like protein 1227886 1228578 692 forward
FAM19038-p1-1.1_001077 TetR/AcrR family transcriptional regulator 1228584 1229216 632 reverse
FAM19038-p1-1.1_001078 MMPL family transporter 1229416 1232223 2807 forward
FAM19038-p1-1.1_001079 ABC transporter permease 1232223 1234775 2552 forward
FAM19038-p1-1.1_001080 Na+/H+ antiporter NhaA GC:nhaA 1234768 1235946 1178 reverse
FAM19038-p1-1.1_001081 NAD-dependent malic enzyme 1236047 1237771 1724 forward
FAM19038-p1-1.1_001082 HlyC/CorC family transporter 1237779 1238897 1118 reverse
FAM19038-p1-1.1_001083 HlyC/CorC family transporter 1238894 1240207 1313 reverse
FAM19038-p1-1.1_001084 hypothetical protein 1240499 1240804 305 forward
FAM19038-p1-1.1_001085 hypothetical protein 1240850 1241173 323 forward
FAM19038-p1-1.1_001086 acylphosphatase 1241295 1241570 275 reverse
FAM19038-p1-1.1_001087 hypothetical protein 1241567 1242529 962 reverse
FAM19038-p1-1.1_001088 acetate--CoA ligase family protein 1243604 1245763 2159 reverse
FAM19038-p1-1.1_001089 phosphoglucomutase/phosphomannomutase family protein 1246125 1247549 1424 forward
FAM19038-p1-1.1_001090 ABC transporter permease GC:pseudo-gene 1248414 1248992 578 reverse
FAM19038-p1-1.1_001091 ABC transporter ATP-binding protein 1249018 1249821 803 reverse
FAM19038-p1-1.1_001092 NAD-dependent succinate-semialdehyde dehydrogenase 1249928 1251391 1463 forward
FAM19038-p1-1.1_001093 6-phosphofructokinase 1251574 1252704 1130 forward
FAM19038-p1-1.1_001094 ArsR family transcriptional regulator 1252716 1253339 623 reverse
FAM19038-p1-1.1_001095 multicopper oxidase domain-containing protein 1253336 1256125 2789 reverse
FAM19038-p1-1.1_001096 hypothetical protein 1256118 1257155 1037 reverse
FAM19038-p1-1.1_001097 DNA starvation/stationary phase protection protein 1257414 1257944 530 forward
FAM19038-p1-1.1_001098 N-acetyltransferase 1258036 1258326 290 reverse
FAM19038-p1-1.1_001099 PDZ domain-containing protein 1258393 1259526 1133 reverse
FAM19038-p1-1.1_001100 hypothetical protein 1259569 1260120 551 reverse