locus tag: FAM19471-i1-1.1_001025 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 cytosine deaminase
Gene Code
 codA
KEGG reaction
 R02922 Creatinine iminohydrolase; Creatinine + H2O <=> N-Methylhydantoin + Ammonia kornec01100 kornec00330
KEGG reaction
 R01411 5-Methylcytosine aminohydrolase; 5-Methylcytosine + H2O <=> Thymine + Ammonia kornec01100 kornec00240
KEGG reaction
 R00974 Cytosine aminohydrolase; Cytosine + H2O <=> Uracil + Ammonia kornec01100 kornec00240
Ortholog
 N0.HOG0002398 cytosine deaminase
KEGG gene
 K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] kornec01100 kornec00330 kornec00240
Eggnog Protein
 EP:codA
Eggnog Ortholog
 EO:1TRK2
Eggnog Description
 ED:cytosine deaminase
EC Number
 EC:3.5.4.1 cytosine deaminase; isocytosine deaminase kornec01100 kornec00240

Occurs in the following pathway maps:

Pathway Description
kornec00240 Pyrimidine metabolism
kornec00330 Arginine and proline metabolism
kornec01100 Metabolic pathways

Sequences

Nucleotide sequence (GC-content: 56.2 %):

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ATGCTAATTAAAAACGTCCACGTTAACAACCAACCCGAACTCGTTGACGTCGCGATTACCGACGGCAAGTTTACCGCTATTGAAGCCGGGCTAACTCCCAAGCCCGGCGAGCAGGTAATCGAGGGGAACGGGAAACTTTTGTTGCCACCCTTCATTGATTCCCACGTCCACTTGGATGCGACTTTGACGGCGGGGCAGCCCGAGTTTAACGAATCCGGGACCCTCTTTGACGGGATCCGAATCTGGAGCGAGCGTAAAAAGTCGCTAACCAAAGAAGACGTTAAGAAGCGGGCTAAGCAGACGATCATGAAGATGGTTGGCCACGGAATCCAACACGTCCGCTCCCACGTTGACGTGACCGACCCGCACCTGATCGCCGCCCAGGCCCTCTTGGAACTCAAACACGACTTAAAAGACCAGGTTGACCTGCAGTTGGTGGCCTTCCCCCAGGAGGGGATCTTAAGCTTCCCGCACGGCAAGGAATTAATGGAACAAGCGGTCAAAGAGGGGCTCGATGTGGTCGGGGGGATCCCGCACTTTGAGTTTTCGACCGAGTACGGTTGGCAATCGGTCCACTTCTTAATGGCCCTAGCCGACAAGTATGGTAAGCTAGTTGACGTGCACTGCGACGAAATTGACGACCCAATGTCGCGCCACCTAGAAGTGCTGGCGACCGAAGCGTACGAACGGCAAATGGGCGACCGCGTGACGGCGAGCCACACCACGGCGATGGGTTCGTATAACGACGCGTACACCTACAAGTTGTTCCGACTCTTGAAGATGAGCGGGGTTAACTTCGTGGCTAACCCGCTGGTGAACGTTCACCTGGGCGGGCGCTTTGATACCTACCCGAAGCGGCGTGGCGTCACCCGGGTCAAGGAGCTCGACGCCGCCGGGATCAACGTTTCCTTTGGTGAAGATGACGTCCAGGACCCGTGGAACCCGCTGGGTGATGGTAACATGCTCGACGCCGTGACGATGGGGGTCTACATTGCCCACCTGATGGGTTATTCCCAGTTGCAAGACTCGTTTAAGTTTGTGACGACCAACGCGGCCAGGACCCTGCACATCGAGGACCAGTACGGGATTGAGGTCGGTAAGCCCGGCGACTGCATCTTATTAAACGGTCAGAACTTCTACCAGGCCCTAAACCAACACGCCGAAGTCCTGTACAACATCCGCCACGGACGTGTTCTGGCCCAAACTAAGCCGGCCGAGACGACGATCCACTTAAATTAG

Protein sequence:

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MLIKNVHVNNQPELVDVAITDGKFTAIEAGLTPKPGEQVIEGNGKLLLPPFIDSHVHLDATLTAGQPEFNESGTLFDGIRIWSERKKSLTKEDVKKRAKQTIMKMVGHGIQHVRSHVDVTDPHLIAAQALLELKHDLKDQVDLQLVAFPQEGILSFPHGKELMEQAVKEGLDVVGGIPHFEFSTEYGWQSVHFLMALADKYGKLVDVHCDEIDDPMSRHLEVLATEAYERQMGDRVTASHTTAMGSYNDAYTYKLFRLLKMSGVNFVANPLVNVHLGGRFDTYPKRRGVTRVKELDAAGINVSFGEDDVQDPWNPLGDGNMLDAVTMGVYIAHLMGYSQLQDSFKFVTTNAARTLHIEDQYGIEVGKPGDCILLNGQNFYQALNQHAEVLYNIRHGRVLAQTKPAETTIHLN

GenBank Info

gene - codA
locus_tag - FAM19471-i1-1.1_001025
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012391211.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - cytosine deaminase
protein_id - extdb:FAM19471-i1-1.1_001025

Gene locus (click to toggle display options) expand

Located on scaffold FAM19471-i1-1_scf0017

Update range to 10000 bp
FAM19471-i1-1.1_001024
FAM19471-i1-1.1_001026