locus tag: FAM19471-i1-1.1_000979 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R09487 germacradienol geosmin-lyase (acetone forming); (1E,4S,5E,7R)-Germacra-1(10),5-dien-11-ol + H2O <=> Geosmin + Acetone kornec01110 kornec00909
KEGG reaction
 R08543 (2E,6E)-farnesyl-diphosphate diphosphate-lyase (adding water;acetone-geosmin-forming); trans,trans-Farnesyl diphosphate + 2 H2O <=> Geosmin + Diphosphate + Acetone
KEGG reaction
 R07648 2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase [(-)-Germacrene D-forming]; trans,trans-Farnesyl diphosphate <=> (-)-Germacrene D + Diphosphate kornec00909
KEGG reaction
 R07647 2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase [(1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol-forming]; trans,trans-Farnesyl diphosphate + H2O <=> (1E,4S,5E,7R)-Germacra-1(10),5-dien-11-ol + Diphosphate kornec01100 kornec01110 kornec00909
Ortholog
 N0.HOG0000541 Crp/Fnr family transcriptional regulator
KEGG gene
 K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
KEGG gene
 K10187 cyc2; germacradienol/geosmin synthase [EC:4.2.3.22 4.2.3.75 4.1.99.16] kornec01100 kornec01110 kornec00909
Eggnog Protein
 EP:rcfA
Eggnog Ortholog
 EO:1UZT0
Eggnog Description
 ED:helix_turn_helix
EC Number
 EC:4.2.3.75 (-)-germacrene D synthase kornec00909
EC Number
 EC:4.2.3.22 germacradienol synthase; germacradienol/germacrene-D synthase; 2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase [(1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol-forming] kornec01100 kornec01110 kornec00909
EC Number
 EC:4.1.99.16 geosmin synthase kornec01110 kornec00909
Gene Product
 Crp/Fnr family transcriptional regulator

Occurs in the following pathway maps:

Pathway Description
kornec00909 Sesquiterpenoid and triterpenoid biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites

Sequences

Nucleotide sequence (GC-content: 55.1 %):

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ATGATGACGACGATCAATGGTGAGCACCTCTGCGTTTCACTGGTACCGCTCTTTAACCAACTGTCTTTGCCGGATCAAAAACGGATTGAAACCATGGTGCACCACCACCACTACCAACGCCGTGAAATTATCCTTTCCCCGGGCGACGAGGGAAAGCTACTGATCGTCGAAGCGGGACGGTTGAAACTCTACCAACTCAGCGAAAGCGGCGACGAACAGGTGCTGGCGGTGCTGGGGACTGGCGAGTACGTGGGCGAGCAGTGGCTTTACGGGGCCGCCAATGAAGCAATCTTTGCGGTGGTTGAACAAGACGCCGCCATTTGCGAACTAACCTACGACGCCTTTACCAACCTTTTAGCCGAGTACCCGGAATTGGCGGCCCGGCTCTTGCAACTGACGATGGCCAAGGTGCGGGAATTAACCGCCCAAAACCAGTTTTTGGTAATTGACGGGGTGGAAGAACGTCTGTGGGCCTACCTATCCCACCTGGCCAGCCAAAGGGGTGGGCGCTTTACCCTGCCGATGAAGATGAAGGATTTGGCCGCCTACCTAGGGACAACGCCAGAAACTCTGTCGCGCAAGTTCCGCCACCTGCAAGAAGAAGGGAAGATTACCCGCCAGAACCGTGTAGTGACCATTAACCAATAA

Protein sequence:

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MMTTINGEHLCVSLVPLFNQLSLPDQKRIETMVHHHHYQRREIILSPGDEGKLLIVEAGRLKLYQLSESGDEQVLAVLGTGEYVGEQWLYGAANEAIFAVVEQDAAICELTYDAFTNLLAEYPELAARLLQLTMAKVRELTAQNQFLVIDGVEERLWAYLSHLASQRGGRFTLPMKMKDLAAYLGTTPETLSRKFRHLQEEGKITRQNRVVTINQ

GenBank Info

locus_tag - FAM19471-i1-1.1_000979
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012391723.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - Crp/Fnr family transcriptional regulator
protein_id - extdb:FAM19471-i1-1.1_000979

Gene locus (click to toggle display options) expand

Located on scaffold FAM19471-i1-1_scf0016

Update range to 10000 bp
FAM19471-i1-1.1_000978
FAM19471-i1-1.1_000980