locus tag: FAM19471-i1-1.1_000851 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 carbamoyl-phosphate synthase large subunit
Gene Code
 carB
KEGG reaction
 R10949 Ammonia + Carboxyphosphate <=> Carbamate + Orthophosphate
KEGG reaction
 R10948 ATP:HCO3- phosphotransferase; ATP + HCO3- <=> ADP + Carboxyphosphate
KEGG reaction
 R01395 ATP:carbamate phosphotransferase; ATP + Carbamate <=> ADP + Carbamoyl phosphate kornec01100 kornec00910
KEGG reaction
 R00575 HCO3-:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating); 2 ATP + L-Glutamine + HCO3- + H2O <=> 2 ADP + Orthophosphate + L-Glutamate + Carbamoyl phosphate kornec01100 kornec00250 kornec01240 kornec00240
KEGG reaction
 R00256 L-glutamine amidohydrolase; L-Glutamine + H2O <=> L-Glutamate + Ammonia kornec01100 kornec00250 kornec00220 kornec00471
Ortholog
 N0.HOG0000439 carbamoyl-phosphate synthase large subunit
KEGG gene
 K01955 carB, CPA2; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] kornec01100 kornec00250 kornec01240 kornec00240
Gene Ontology
 GO:1901607 alpha-amino acid biosynthetic process
Gene Ontology
 GO:1901605 alpha-amino acid metabolic process
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901566 organonitrogen compound biosynthetic process
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:0071941 nitrogen cycle metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046394 carboxylic acid biosynthetic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044283 small molecule biosynthetic process
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043604 amide biosynthetic process
Gene Ontology
 GO:0043603 cellular amide metabolic process
Gene Ontology
 GO:0043436 oxoacid metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019752 carboxylic acid metabolic process
Gene Ontology
 GO:0019627 urea metabolic process
Gene Ontology
 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor
Gene Ontology
 GO:0016879 ligase activity, forming carbon-nitrogen bonds
Gene Ontology
 GO:0016874 ligase activity
Gene Ontology
 GO:0016053 organic acid biosynthetic process
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009084 glutamine family amino acid biosynthetic process
Gene Ontology
 GO:0009064 glutamine family amino acid metabolic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008652 cellular amino acid biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006526 arginine biosynthetic process
Gene Ontology
 GO:0006525 arginine metabolic process
Gene Ontology
 GO:0006520 cellular amino acid metabolic process
Gene Ontology
 GO:0006082 organic acid metabolic process
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Gene Ontology
 GO:0004087 carbamoyl-phosphate synthase (ammonia) activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0000050 urea cycle
Eggnog Protein
 EP:carB
Eggnog Ortholog
 EO:1TPID
Eggnog Description
 ED:Carbamoyl-phosphate synthase
EC Number
 EC:6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing); carbamoyl-phosphate synthetase (glutamine-hydrolysing); carbamyl phosphate synthetase (glutamine); carbamoylphosphate synthetase II; glutamine-dependent carbamyl phosphate synthetase; carbamoyl phosphate synthetase; CPS; carbon-dioxide:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating); carA (gene name); carB (gene name); CAD (gene name); hydrogen-carbonate:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating) kornec01100 kornec00250 kornec00240

Occurs in the following pathway maps:

Pathway Description
kornec00220 Arginine biosynthesis
kornec00240 Pyrimidine metabolism
kornec00250 Alanine, aspartate and glutamate metabolism
kornec00471 D-Glutamine and D-glutamate metabolism
kornec00910 Nitrogen metabolism
kornec01100 Metabolic pathways
kornec01240 Biosynthesis of cofactors

Sequences

Nucleotide sequence (GC-content: 53.5 %):

Download Copy to clipboard
ATGCCTAAGAGAACGGATTTACACAAGATCTTAGTGATCGGGTCGGGACCAATTGTGATCGGTCAAGCCGCTGAGTTTGATTACGCTGGCAGCCAGGCCTGCATCAGCCTTAAGGAAGAGGGTTATCAGGTGGTCTTGGTCAATTCCAATCCAGCTACGATCATGACGGACGATCAAATTGCTGACCAAGTCTACTTGGAGCCACTGACGGTACCGTCATTAACCGAGATTATTGAACTGGAGCACCCCGACGCCCTCTTGCCAACCCTGGGCGGGCAAACCGGTCTGAACCTGGCCATCGAGCTCGACCAAGCCGGCGTCTTAAATAAGTTCGGCGTCACTCTTTTAGGCACCGATTTACAAACGATCCAGGAGGCCGAAGACCGAGAGCAATTTAAGCAGTTAATGGAGGAGATTGGGCAACCGGTACCGGCGAGCCTAACCGTTCACACTGTCGAGGCAGCTTGTCAGTTTGCCGAAGAAGCGGGCTACCCAGTAATCGTTCGACCGGCCTTCACTCTTGGGGGAACCGGAGGCGGGATCGCCAACGACCAGGAAGAGCTTGAGCTGATTGCTAAACGGGGGCTAGCTCAGTCGCCGGTCACGGAATGCCTGATTGAGCAAAGTATCGCCGGCTTAAAGGAAATTGAGTTTGAAGTAATGCGCGATGCCAACGGGGACGAGATAAGTGTTTGTTGCATGGAAAATTTCGACCCGGTCGGTATTCACACTGGTGATTCAATCGTAGTGGCGCCCAACCAAACCCTGCCGGATGTTCAGTACCAACGGCTTCGGTCAGCAGCCCTAGCGATCGTAGCCGCCCTAAAGATTGAAGGGGGCTGCAACGTTCAACTGGCCCAGTCACCGATTAGTGATGATTATTACGTGATTGAGGTTAACCCGCGGGTTAGCCGTTCGTCGGCCCTCGCCTCCAAAGCGACTGGCTACCCGATCGCCAAGATTGCCGCTAAGATCGCCGTTGGCCTTAACTTGAGTGAAATCACCAATCCGGTTACCCAGACCACAATCGCTGCCTTCGAGCCAGCCCTCGACTACGTAGTTGTTAAGTTACCGCGCTTCCCCTTTGACAAATTCGGTGGAGCCGATCGCCACTTAGGGACTCAAATGAAGGCAACCGGGGAGGTGATGGGCATCGGTCTAACCTTTGAAGAGGCGCTCTTAAAGGCAATTGACTCGCTGGAAATTGACCCTGGGGTTCAGGCGAGCCTCCTGCCGGCTAACGATGATCAGCTAAGCGACCAGGAATTGGTGGCAGCTCTTAAATCACCAACTGACCTGCGACTGTTTGAGCTCTTCGTCGCCCTTAAACGGGGCTATTCAACCGCTGACTTAGCGGAATGGACCAAGATCAGCCCCTTCTTCTTGCACAAGCTGGCCCACATTTGGCAACTAAAGCGGGAATTAGTATCGCAGGGGGGAGAGGTAGTGGTTAGTGCCAAGCGGTTTGGCTTTACCAACGCCATGCTCGCCAGTGCGCTCCGATGTTCGTTGTCGACCGTTGAGCAGCTAGCTAAAAGTGCGGGGTTAGCCCCGGTTTACAAGACCGTTGATACCTGTGCCGGGGAGTTTGCTAGTGCGACCCCGTACTATTACAGCAGTTATTTCCCGGGCAATAACGAGAGTCAGCCACTGGGTAATAGTGTGTTAGTGCTTGGTTCTGGTCCAATTCGGATTGGTCAGGGGGTCGAATTTGATTACACGACCGTCCACTGCGTTCAAGCGATTCAAGAGGCCGGCTACCGTGCGATCATTATCAATAACAATCCCGAAACGGTTTCGACCGATTTTTCAATTTCCGACAAACTCTACTTTGAACCGCTGACGATTGAGCACGTCATGAACGTGGTCAACCTAGAGCAGCCACGCGGGGTGATCGTTCAGTTTGGGGGTCAAACGGCCATTAACCTGACCAAGGAACTGGTTAAACGGGGGGTTAAAATTCTGGGCACCTCACTCCAGGGGATTGAACAGACCGAGGACCGCCACCAGTTTGAGAAATTACTCAAGGACGCTGAAATCGCCCAACCAAAGGGGGCCACGGCGCTCAATTTAGCCGAGGCCAAGGTGATTGCACCGGTGGTTGGCTATCCGGTAATGGTGCGGCCAAGCTTCGTGCTGGGTGGTCGGGCAATGGCGGTCGTGGAAAACAAAACCGAATTGGTAACCTACGTCAACAAGGCCCTGAAGGCGGCCCCCAACCAACCGGTTCTGATTGATCACTACGTAGCTGGGCTTGAGTGCGAAGTCGACATCTTAAGCGACGGTCACGACGTTTTGATCCCCGGGATCATGGAGCATTTGGAGGGGTCCGGGATTCACTCGGGTGATTCGATGGCCCTGTACCCACCAGTTCGCCTGACGTCAGCCCAGCAAAAAGAAATTGTTCAAACTGCGATTGCAATTGGTCAACGGGTCCACTGTCTGGGAATGATGAACATTCAATTCATCGTTGCCGACCGGGTCTATGTGATTGAAGTCAACCCGCGGGCCAGCCGGACGGTACCGTTTATGAGTAAGGTAACTGGGTATCACTTAGCCAAGCTAGCTACCCGGCTAATCCTGGGTGAAACCTTGGTCGACTTAGGTTTACCAAGTGGTTTAGCAACCCCAAGTAACCACTTCGCTGTCAAAGCGCCGGTCTTTTCCTTTGCTAAGTTGGCCGGACTTACTTGCCGGTTGGCGCCGGAAATGAAGTCAACTGGGGAAACAATTGGAATTGGTGAAAGCCCGGCCGTAGCTCTGGCCAAGGCGCTTGCTAATAGTTATGGCTTAGTAACGCCGGTGAAGGGTCAAATCGTCTTACTTGACCCAGTTGCCGCTACTGACTCTAAATTACGGGCTCAACTTGAACAAGCGGGGCTCCGGGTCGAGGTCTGGGCAAGCCAGCAATTGCCAACGCTGGAACACCAACGGGTCTGGGCAGTGGTTAATGATGACGAAGCGCAAACCACGATAGCACCATTGAACTACTACGCCCTGAGTAACGGGGTGCCCCTCTTTACGGCGGCCACCAGCCTTAGTGAAATCATGTCGTTAAGCAGGGTGGGGGCGCCGCTGGTTAATTTATAA

Protein sequence:

Download Copy to clipboard
MPKRTDLHKILVIGSGPIVIGQAAEFDYAGSQACISLKEEGYQVVLVNSNPATIMTDDQIADQVYLEPLTVPSLTEIIELEHPDALLPTLGGQTGLNLAIELDQAGVLNKFGVTLLGTDLQTIQEAEDREQFKQLMEEIGQPVPASLTVHTVEAACQFAEEAGYPVIVRPAFTLGGTGGGIANDQEELELIAKRGLAQSPVTECLIEQSIAGLKEIEFEVMRDANGDEISVCCMENFDPVGIHTGDSIVVAPNQTLPDVQYQRLRSAALAIVAALKIEGGCNVQLAQSPISDDYYVIEVNPRVSRSSALASKATGYPIAKIAAKIAVGLNLSEITNPVTQTTIAAFEPALDYVVVKLPRFPFDKFGGADRHLGTQMKATGEVMGIGLTFEEALLKAIDSLEIDPGVQASLLPANDDQLSDQELVAALKSPTDLRLFELFVALKRGYSTADLAEWTKISPFFLHKLAHIWQLKRELVSQGGEVVVSAKRFGFTNAMLASALRCSLSTVEQLAKSAGLAPVYKTVDTCAGEFASATPYYYSSYFPGNNESQPLGNSVLVLGSGPIRIGQGVEFDYTTVHCVQAIQEAGYRAIIINNNPETVSTDFSISDKLYFEPLTIEHVMNVVNLEQPRGVIVQFGGQTAINLTKELVKRGVKILGTSLQGIEQTEDRHQFEKLLKDAEIAQPKGATALNLAEAKVIAPVVGYPVMVRPSFVLGGRAMAVVENKTELVTYVNKALKAAPNQPVLIDHYVAGLECEVDILSDGHDVLIPGIMEHLEGSGIHSGDSMALYPPVRLTSAQQKEIVQTAIAIGQRVHCLGMMNIQFIVADRVYVIEVNPRASRTVPFMSKVTGYHLAKLATRLILGETLVDLGLPSGLATPSNHFAVKAPVFSFAKLAGLTCRLAPEMKSTGETIGIGESPAVALAKALANSYGLVTPVKGQIVLLDPVAATDSKLRAQLEQAGLRVEVWASQQLPTLEHQRVWAVVNDDEAQTTIAPLNYYALSNGVPLFTAATSLSEIMSLSRVGAPLVNL

GenBank Info

gene - carB
locus_tag - FAM19471-i1-1.1_000851
EC_number - 6.3.5.5
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012391100.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - carbamoyl-phosphate synthase large subunit
protein_id - extdb:FAM19471-i1-1.1_000851

Gene locus (click to toggle display options) expand

Located on scaffold FAM19471-i1-1_scf0012

Update range to 10000 bp

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
FAM19471-i1-1.1_000850
FAM19471-i1-1.1_000852