locus tag: FAM19038-p1-1.1_002665 genome: FAM19038-p1-1.1
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998

Annotations

Type Name Description Pathways
Gene Product
 nucleoside-diphosphate kinase
Gene Code
 ndk
KEGG reaction
 R11895 ATP:5-fluorodeoxyuridine-diphosphate phosphotransferase; ATP + 5-Fluorodeoxyuridine diphosphate <=> ADP + 5-Fluorodeoxyuridine triphosphate kornec00983
KEGG reaction
 R11894 ATP:5-fluorouridine-diphosphate phosphotransferase; ATP + 5-Fluorouridine diphosphate <=> ADP + 5-Fluorouridine triphosphate kornec00983
KEGG reaction
 R03530 ATP:dIDP phosphotransferase; ATP + dIDP <=> ADP + dITP kornec00230
KEGG reaction
 R02331 ATP:dUDP phosphotransferase; ATP + dUDP <=> ADP + dUTP kornec01100 kornec00240
KEGG reaction
 R02326 ATP:dCDP phosphotransferase; ATP + dCDP <=> ADP + dCTP kornec01100 kornec00240
KEGG reaction
 R02093 ATP:dTDP phosphotransferase; ATP + dTDP <=> ADP + dTTP kornec01100 kornec00240
KEGG reaction
 R01857 ATP:dGDP phosphotransferase; ATP + dGDP <=> ADP + dGTP kornec01100 kornec00230
KEGG reaction
 R01137 ATP:dADP phosphotransferase; ATP + dADP <=> ADP + dATP kornec01100 kornec00230
KEGG reaction
 R00722 ATP:IDP phosphotransferase; ATP + IDP <=> ADP + ITP kornec01100 kornec00230
KEGG reaction
 R00570 ATP:CDP phosphotransferase; ATP + CDP <=> ADP + CTP kornec01100 kornec01240 kornec00240
KEGG reaction
 R00330 ATP:GDP phosphotransferase; ATP + GDP <=> ADP + GTP kornec01100 kornec00230
KEGG reaction
 R00156 ATP:UDP phosphotransferase; ATP + UDP <=> ADP + UTP kornec01100 kornec01240 kornec00240
KEGG reaction
 R00139 ATP:2'-deoxy-5-hydroxymethylcytidine-5'-diphosphate phosphotransferase; 2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate + ATP <=> 2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate + ADP kornec00240
KEGG reaction
 R00124 ATP:ADP phosphatransferase; ATP + ADP <=> ADP + ATP kornec01100 kornec00230 kornec01240 kornec01110
Ortholog
 N0.HOG0001442 nucleoside-diphosphate kinase
KEGG gene
 K00940 ndk, NME; nucleoside-diphosphate kinase [EC:2.7.4.6] kornec01100 kornec00230 kornec04016 kornec00983 kornec01240 kornec01110 kornec00240
Eggnog Protein
 EP:ndk
Eggnog Ortholog
 EO:2IFBU
Eggnog Description
 ED:Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism
EC Number
 EC:2.7.4.6 nucleoside-diphosphate kinase; nucleoside 5'-diphosphate kinase; nucleoside diphosphate (UDP) kinase; nucleoside diphosphokinase; nucleotide phosphate kinase; UDP kinase; uridine diphosphate kinase kornec01100 kornec00230 kornec00983 kornec01110 kornec00240

Occurs in the following pathway maps:

Pathway Description
kornec00230 Purine metabolism
kornec00240 Pyrimidine metabolism
kornec00983 Drug metabolism - other enzymes
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01240 Biosynthesis of cofactors
kornec04016 MAPK signaling pathway - plant

Sequences

Nucleotide sequence (GC-content: 68.3 %):

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ATGAGCGACAAGCAGAGAGTCCTCGTCCTCCTCAAGCCAGACGCAGTGAAGCGTCGTCTCATCGGAGAGATCATCGGCAGGTACGAGGCGCGCGGGCTGACGGTGCGGGCCATGGAGCTGCGCACGATCGACGCCGAGATGGCCGCCCAGCACTACGCCGAACACATCGGACGTCCCTATTACGAGCCCCTGGTGGAGTTCATCACCTCCGGCCCGCTGGTGGCGATGGTCCTGGAGGGTCGCAAGGCGATCCCGGTGGTCCGCGCCATGAACGGGAAGACCGACTGCGCCGAGGCCGTCCCCGGCACCATCCGCGGGGATCTCGGGGTGCACTACCGTCGCAACCTGGTGCACGCCTCGGACTCCCCGGAGTCGGCGGCCCGCGAGGTCGCCCTGTGGTTCCCCCAGCTCGCCGAGGAGCCGGACGAGACCGCATGA

Protein sequence:

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MSDKQRVLVLLKPDAVKRRLIGEIIGRYEARGLTVRAMELRTIDAEMAAQHYAEHIGRPYYEPLVEFITSGPLVAMVLEGRKAIPVVRAMNGKTDCAEAVPGTIRGDLGVHYRRNLVHASDSPESAAREVALWFPQLAEEPDETA

GenBank Info

gene - ndk
locus_tag - FAM19038-p1-1.1_002665
EC_number - 2.7.4.6
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015070054.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - nucleoside-diphosphate kinase
protein_id - extdb:FAM19038-p1-1.1_002665

Gene locus (click to toggle display options) expand

Located on scaffold FAM19038-p1-1_scf0001

Update range to 10000 bp
FAM19038-p1-1.1_002664
FAM19038-p1-1.1_002666