locus tag: FAM19038-p1-1.1_002663 genome: FAM19038-p1-1.1
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998

Annotations

Type Name Description Pathways
Gene Product
 Rne/Rng family ribonuclease
Ortholog
 N0.HOG0003870 Rne/Rng family ribonuclease
KEGG gene
 K08301 rng, cafA; ribonuclease G [EC:3.1.26.-]
KEGG gene
 K08300 rne; ribonuclease E [EC:3.1.26.12] kornec03018
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071840 cellular component organization or biogenesis
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0044085 cellular component biogenesis
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042254 ribosome biogenesis
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0022613 ribonucleoprotein complex biogenesis
Gene Ontology
 GO:0016072 rRNA metabolic process
Gene Ontology
 GO:0016071 mRNA metabolic process
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006397 mRNA processing
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006364 rRNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Eggnog Protein
 EP:rne
Eggnog Ortholog
 EO:2GMM5
Eggnog Description
 ED:Ribonuclease E/G family
EC Number
 EC:3.1.26.12 ribonuclease E; endoribonuclease E; RNase E; Rne protein

Occurs in the following pathway maps:

Pathway Description
kornec03018 RNA degradation

Sequences

Nucleotide sequence (GC-content: 71.0 %):

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ATGGTCCAGGACAGCAACGACAGCACCACCTCGGAATCGACACCTGAGAAGTCGAGATCGCGACACCACAGGGCGGCGTCGCGACCGGCAGGGGCACCCACCACCCCCGCGATCACCGCCAGCCCGGCAGCCCCGGCCCTGACGATCGGCGCCGCGGGCTCCGGCGGCAGCGTCATCACCTCCGCGACAGACACCTCCGACCTTCCCCGCCCCCCGGTCGGACGTCGTCGTCGCGCCACCCGCTCGAGCAGTTCCCCGGCCGCCGAGAAGGCCGCCCCCAGGACGGCCGAGAAGCCGGTCGCCACGGCCGCTGAGAAGGCCGTTGAGAAGACCGACGAGAAGCCGGCCCGCACCACGCGCCGCCGCGCCACCCGCTCTCAGGCCCCCGCGAGCGCTCCCGCTGCTGCCGGCGCCGAGGACGGTGCCGCCTCCGAGGCCCCCACCAGGAGGTCCAGGCGGACCGCCGCGACGCGCAAGGACGCCGCGGACACCGGCGCCGATGAGGGTGCCATCGACGCGGCCCTGTCGAAGGCCGCCGAGCACGCCGCCGACCGGACCGACGCTCTGGACGCCGCGGTCGCCAACCCCTTCGCCTCCGCCGACCCGAACCGGTCGACCGCAGACATCCTCGACTCGCTGGCCGCCGAGATCGGTGGCGAGGAGGCCGCCCCGAAGCGGACCCGTCGTCGTCGCACCCGTTCGGGCGAGAAGACCCCTGAGCAGAAGGACGGTGCACAGAAGGACGGTGCACAGAGGGACAACGAGCCGAACGACAACGAGCAGAAGCCCGCGGAGCAGCACGAGGAGGCCGCCGAGCAGGACGGCCCCACCGGCCAGGCTCCCGCCGACCGGGCCGGGGAGAGCTCCGCGCCCGATCAGCACGAGGACCAGCACGACGAGGACCACGAGGACCAGCACGGCGAGTCCGAGGACGCCGATGAGTCCCGCGGCACCCGTCGCCGTCGTCGTCGCGGAGGACGCCGCCGTCGTCGCGGTGAGGCCGCCGAGGACCACGAGGACCAGCACGGCGAGGACTCCGAGGAGTCCGACGGCGAGGATCAGCACGACAAGCACGAGAACCACCGGCACGAGGACCGCGAGAAGCAGGACCACGACCGCAACGGCGAGGAGGAGGCCGGCTCGAGCCGTCGTCGCCGCCGTCGTCGCCGTCGCCGCGGGGAGGACACCACCGGTGCCGACGACGACCCGAGCGACGTCGTCGTCAAGGTCCGCGAGCCGCGCCCGCGCCACTCGGTGACCGACGAGGTCACCGGGATCGAGGGGTCGACCCGCCTGGAGGCCAAGAAGCAGCGCCGCCGCGAGGGCCGGGCCGCCGGCCGGCGCCGCAGCGCGGTGCTCACCGAGGCCGAGTTCCTGGCCCGCCGCGAGCAGGTCGAGCGCCGGATGGTGGTGCGCCAGTCCGAGGACTACTCCCAGCTGGCGGTCCTGGAGGACGGGGCACTGGTCGAGCACTACGTCGACCGGTCCTCGGCGGCCTCCTCGATCGGCAACATCTACCTCGGCAAGGTGCAGAACGTGCTGCCCTCGATGGAGGCGGCCTTCGTCGACATCGGTCGCGGCCGCAACGCCGTCCTGTACGCCGGCGAGGTCGACTGGTCGAGGTACGGCAAGGAGGGCGAGCCCAGGCGCATTGAGCACGCCCTGAAGTCGGGCGACCAGGTGCTGGTCCAGGTGTCCAAGGACCCGGTCGGTCAGAAGGGCGCCAGGCTCACCAGCCACATCTCGATCCCCGGTCGCTTCATCGTCTACTCCCCGGGCGGACAGCTGTCCGGGATCTCCCGCAAGCTCGCCGACACCGAGCGCAAGCGGCTGAAGAAGATCATCGACAGCAACATCCCCTCCGACGCCTCCGTGATCGTGCGGACCGCCGCCGAGGGCGCCTCCGAGGAGGACCTGGAGCGCGACATCAATCGCCTCAAGGCCCAGTGGGAGGTCATCGAGCGCAAGGCCAAGAGCAGCCACGCCCCGGCGATGCTGTACACCGAGCCCGACCTGACCCTGCGGATCATCCGCGACCTGTTCACCGCCGACTTCACCGAACTGGTGGTGGCCGGTGCCGGTGGGCCCGATGACGCCTACGACACCATCAAGGGCTACATCGACCACGTCGCCCCCGATCTGGGCGGCCGGCTGACCCGCTGGGACACCGAGACCCAGGGCGATCCCTTCGCCCAGTACCGGATCGACGAGCAGATCGCCAAGGCCCTGGAGCGCAAGGTCTTCCTGCCCTCCGGCGGCTCCCTGGTGATCGACCGCACCGAGGCCATGACGGTCATCGACGTCAACACCGGCAAGTTCACCGGATCGGCCGGCAACCTGGAGGCCACCGTCACCGCCAACAACCTGGAGGCGGCCGAGGAGATCGTCCGCCAGCTCAGGCTGCGCGACATCGGCGGCATCATCGTCACCGACTTCATCGACATGGTGCTTCCGGTCAACCGGGAGCTGCTGGTGAGGCGGCTGGTGGAGTGCCTGGGACGGGACAGGACCCGCCACCAGGTCTCCGAGGTGACCTCCCTGGGCCTGGTGCAGATGACCCGTAAGAAGATCGGCACCGGACTGGCCGAGGCCTTCACCGAGGAGTGCAAGGAGTGCGGCGGCCGGGGATATCATCGGTTCACCGAACCTGTGGACTCGCAGGCTCCGGCCGACGGCGGGGAGAGGTCGGCCCACAAGGGTCGCTCGAACCACTCCCGGTCGGGATCGAAGCACTCGGGCCACGGCTCCAGAAAGTCGGACTGA

Protein sequence:

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MVQDSNDSTTSESTPEKSRSRHHRAASRPAGAPTTPAITASPAAPALTIGAAGSGGSVITSATDTSDLPRPPVGRRRRATRSSSSPAAEKAAPRTAEKPVATAAEKAVEKTDEKPARTTRRRATRSQAPASAPAAAGAEDGAASEAPTRRSRRTAATRKDAADTGADEGAIDAALSKAAEHAADRTDALDAAVANPFASADPNRSTADILDSLAAEIGGEEAAPKRTRRRRTRSGEKTPEQKDGAQKDGAQRDNEPNDNEQKPAEQHEEAAEQDGPTGQAPADRAGESSAPDQHEDQHDEDHEDQHGESEDADESRGTRRRRRRGGRRRRRGEAAEDHEDQHGEDSEESDGEDQHDKHENHRHEDREKQDHDRNGEEEAGSSRRRRRRRRRRGEDTTGADDDPSDVVVKVREPRPRHSVTDEVTGIEGSTRLEAKKQRRREGRAAGRRRSAVLTEAEFLARREQVERRMVVRQSEDYSQLAVLEDGALVEHYVDRSSAASSIGNIYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVDWSRYGKEGEPRRIEHALKSGDQVLVQVSKDPVGQKGARLTSHISIPGRFIVYSPGGQLSGISRKLADTERKRLKKIIDSNIPSDASVIVRTAAEGASEEDLERDINRLKAQWEVIERKAKSSHAPAMLYTEPDLTLRIIRDLFTADFTELVVAGAGGPDDAYDTIKGYIDHVAPDLGGRLTRWDTETQGDPFAQYRIDEQIAKALERKVFLPSGGSLVIDRTEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVTDFIDMVLPVNRELLVRRLVECLGRDRTRHQVSEVTSLGLVQMTRKKIGTGLAEAFTEECKECGGRGYHRFTEPVDSQAPADGGERSAHKGRSNHSRSGSKHSGHGSRKSD

GenBank Info

locus_tag - FAM19038-p1-1.1_002663
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015070058.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - Rne/Rng family ribonuclease
protein_id - extdb:FAM19038-p1-1.1_002663

Gene locus (click to toggle display options) expand

Located on scaffold FAM19038-p1-1_scf0001

Update range to 10000 bp
FAM19038-p1-1.1_002662
FAM19038-p1-1.1_002664