genome:
FAM18356-i1-1.1
organism:
FAM18356
old identifier:
FAM18356
species:
Leuconostoc mesenteroides
taxid:
1245
This genome is a representative of
FAM18356.
Metadata
| Key Parameters |
|
| Representative? |
True |
| Contaminated? |
False |
| Sequencing Information |
|
| Sequencing technology |
Illumina |
| Assembly Information |
|
| GC content |
37.8 |
| Longest scaffold |
383178 |
| Assembly size |
1871533 |
| Number of scaffolds |
40 |
| N50 |
96446 |
| Number of gaps |
5 |
| Total Ns |
5 |
| Annotation Information |
|
| Annotations by category |
|
|
# genes with annotation |
# unique annotations |
Browse anntoations |
| EC Number (EC) |
622 |
558 |
link
|
| KEGG gene (KG) |
1164 |
1173 |
link
|
| KEGG reaction (KR) |
461 |
732 |
link
|
| Gene Ontology (GO) |
506 |
2219 |
link
|
| Ortholog (OL) |
0 |
0 |
link
|
| Gene Code (GC) |
558 |
366 |
link
|
| Gene Product (GP) |
1957 |
1172 |
link
|
| Eggnog Protein (EP) |
1174 |
1073 |
link
|
| Eggnog Ortholog (EO) |
1650 |
1452 |
link
|
| Eggnog Description (ED) |
1489 |
1134 |
link
|
| Subcellular location (SL) |
0 |
0 |
link
|
| ABRicate hit (AR) |
0 |
0 |
link
|
BUSCO
| BUSCO |
dataset undefined |
| Single-copy |
388 |
| Duplicated |
2 |
| Fragmented |
5 |
| Missing |
7 |
| Complete |
390 |
| Total |
402 |
16S 16S NCBI-db
| taxid |
evalue |
description |
| Leuconostoc mesenteroides |
0.0 |
Leuconostoc mesenteroides strain ATCC 8293 16S ribosomal RNA, partial sequence |
| Leuconostoc mesenteroides subsp. jonggajibkimchii |
0.0 |
Leuconostoc mesenteroides subsp. jonggajibkimchii strain DRC1506 16S ribosomal RNA, complete sequence |
| Leuconostoc mesenteroides subsp. dextranicum |
0.0 |
Leuconostoc mesenteroides subsp. dextranicum strain NBRC 100495 16S ribosomal RNA, partial sequence |
| Leuconostoc mesenteroides |
0.0 |
Leuconostoc mesenteroides strain JCM 6124 16S ribosomal RNA, partial sequence |
| Leuconostoc gasicomitatum |
0.0 |
Leuconostoc gelidum subsp. gasicomitatum strain TB 1-10 16S ribosomal RNA, complete sequence |
16S 16S dairydb
| taxid |
confidence |
description |
| Leuconostoc mesenteroides |
96.866331 |
Leuconostoc mesenteroides |
Download files
- Assembly
- Coding sequences (CDS)
- Custom annotations
Contigs
40 contigs · 1871533 bp total · N50: 96446 bp · GC: 37.8%
(from annotation)
| Contig |
Length (bp) ↓ |
GC % |
Genes |
Type |
Circular |
| FAM18356-i1-1.1_scf1 |
383178 |
37.8 |
379 |
-
|
No |
| FAM18356-i1-1.1_scf2 |
232649 |
37.4 |
256 |
-
|
No |
| FAM18356-i1-1.1_scf3 |
163665 |
38.3 |
150 |
-
|
No |
| FAM18356-i1-1.1_scf4 |
100842 |
38.2 |
116 |
-
|
No |
| FAM18356-i1-1.1_scf5 |
96446 |
37.7 |
96 |
-
|
No |
| FAM18356-i1-1.1_scf6 |
86356 |
38.5 |
81 |
-
|
No |
| FAM18356-i1-1.1_scf7 |
85585 |
37.4 |
86 |
-
|
No |
| FAM18356-i1-1.1_scf8 |
84049 |
38.8 |
107 |
-
|
No |
| FAM18356-i1-1.1_scf9 |
75554 |
37.8 |
79 |
-
|
No |
| FAM18356-i1-1.1_scf10 |
69611 |
38.5 |
72 |
-
|
No |
| FAM18356-i1-1.1_scf11 |
63680 |
37.6 |
66 |
-
|
No |
| FAM18356-i1-1.1_scf12 |
58451 |
37.6 |
70 |
-
|
No |
| FAM18356-i1-1.1_scf13 |
50036 |
38.5 |
46 |
-
|
No |
| FAM18356-i1-1.1_scf14 |
35405 |
36.6 |
42 |
-
|
No |
| FAM18356-i1-1.1_scf15 |
34563 |
36.3 |
33 |
-
|
No |
| FAM18356-i1-1.1_scf16 |
29702 |
38.0 |
25 |
-
|
No |
| FAM18356-i1-1.1_scf17 |
28397 |
37.5 |
29 |
-
|
No |
| FAM18356-i1-1.1_scf18 |
25466 |
36.0 |
26 |
-
|
No |
| FAM18356-i1-1.1_scf19 |
24312 |
36.6 |
23 |
-
|
No |
| FAM18356-i1-1.1_scf20 |
23013 |
38.6 |
25 |
-
|
No |
| FAM18356-i1-1.1_scf21 |
21496 |
38.2 |
25 |
-
|
No |
| FAM18356-i1-1.1_scf22 |
18298 |
37.2 |
19 |
-
|
No |
| FAM18356-i1-1.1_scf23 |
16512 |
38.9 |
19 |
-
|
No |
| FAM18356-i1-1.1_scf24 |
11301 |
35.1 |
13 |
-
|
No |
| FAM18356-i1-1.1_scf25 |
10914 |
37.3 |
15 |
-
|
No |
| FAM18356-i1-1.1_scf26 |
6549 |
35.8 |
9 |
-
|
No |
| FAM18356-i1-1.1_scf27 |
5342 |
48.4 |
4 |
-
|
No |
| FAM18356-i1-1.1_scf28 |
4789 |
39.9 |
6 |
-
|
No |
| FAM18356-i1-1.1_scf29 |
4399 |
32.2 |
5 |
-
|
No |
| FAM18356-i1-1.1_scf30 |
4269 |
34.4 |
8 |
-
|
No |
| FAM18356-i1-1.1_scf31 |
3327 |
33.0 |
4 |
-
|
No |
| FAM18356-i1-1.1_scf32 |
3216 |
35.0 |
4 |
-
|
No |
| FAM18356-i1-1.1_scf33 |
3043 |
37.4 |
4 |
-
|
No |
| FAM18356-i1-1.1_scf34 |
2724 |
35.6 |
4 |
-
|
No |
| FAM18356-i1-1.1_scf35 |
1546 |
33.1 |
3 |
-
|
No |
| FAM18356-i1-1.1_scf36 |
947 |
34.2 |
2 |
-
|
No |
| FAM18356-i1-1.1_scf37 |
939 |
38.9 |
3 |
-
|
No |
| FAM18356-i1-1.1_scf38 |
398 |
39.9 |
1 |
-
|
No |
| FAM18356-i1-1.1_scf39 |
309 |
27.5 |
1 |
-
|
No |
| FAM18356-i1-1.1_scf40 |
255 |
34.1 |
1 |
-
|
No |
| Total |
1871533 |
|
1957 |
|
|
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