locus tag:
FAM19471-i1-1.1_001143
genome:
FAM19471-i1-1.1
species:
Limosilactobacillus fermentum
taxid:
1613
Annotations
| Type |
Name |
Description |
Pathways |
|
Gene Code
|
rnr |
|
|
|
Gene Product
|
ribonuclease R |
|
|
|
Ortholog
|
N0.HOG0001280 |
ribonuclease R |
|
|
KEGG gene
|
K12585 |
DIS3, RRP44; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] |
kornec03018
|
|
KEGG gene
|
K12573 |
rnr, vacB; ribonuclease R [EC:3.1.13.1] |
kornec03018
|
|
Eggnog Protein
|
EP:rnr |
|
|
|
Eggnog Ortholog
|
EO:1TQ1G |
|
|
|
Eggnog Description
|
ED:3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs |
|
|
Occurs in the following pathway maps:
| Pathway |
Description |
| kornec03018 |
RNA degradation |
Sequences
ATGACAGATTTAAAGACACAAATACTAGACTACCTCACGGAAAACGCGGCCCTGAGTTTCTCGGCCGAAAAGTTGGCCCGGGTGCTTTCAATGACCAGTGCGGACGAATTCACCCCCCTGGTGCAGGCCCTCGTTCAATTAGAGCGGGAAGGAAAAGTGGAAGTGACGGATGATGGTGAATTTAAGCTGGTTCCCCAGGTAAAGGAATTCACTGGCGTTTTTCACCGTAACCCCAAGGGCTTTGGCTTTGTTTCCTATGACCCGGAAATGCCAGATATTTTCATTAACCCGGACCACACGATGTGCGCCCTAACCGGTGATGAAGTGGCCGTTAAGATCTTACAAGCGGGCGATCCAACCCGCGACCAGAGGCCGGAAGGGGAGATCACGAAGATCATTACCCGCTCCTACGACCACGTGGTGGGGGAATTTAAGAACATGACGATGGGCAACTTCATCGGTGAAGTGATTTTAAAGGATAAAAAGCTGGGGAGCCTCCGCTTTTACGTGACCGGCGATGGGATTCACCCGCAGGATAATGAAGTGGTCACCGCAAGCATTGCGACCTACCCAAGCGAAGACGCTCCGGAGGTGATGACTGGGCCGGCCCTGGAAGTGATCGGGGATAAGGATGAACCCGGCGTCGACATTCTTTCGGTGGTGTACGCCCACGACGTTCCCCACGAATTCCCAAAGGAAGTTTTGGACCAAGCCAACCAAATCCCGTTGACCGTCCAACCAGAAGAAAAGGTCGGGCGCCCGGATTTAACTGACCAGCCCTTGGTAACGATTGATTCAATTGAGTCTAAGGACTTAGACGACGCCGTGGTGGCTTGGAAGCTTGATAACGGCAACTACCACTTGGGGGTCCACATCGCCGACGTTTCCCACTACGTTCAACCGGGAACGCCACTGGACGAAGAGGCCTTCAAGCGGGGGACGTCGGTTTATTTGACCGACCGGGTAATTCCAATGTTGCCGCGGCGCCTTTCCAACGGGATTTGTTCCCTTAACCCGGGTGAAGAACGGTTAGCCATGTCGTGTGAAATGGAAATTGACCCCCAAGGAAACATCGTGAGCCACGAGATCTTCCCGTCGGTGATTCGTTCGCACGCCCGGATGACCTATAAGGGTGTCAACGCCATTTTAGAGGCCCACGATGAAAAGACCCGCCAGGAATATAAGGAACTGGTGCCGATGTTTGAAACGATGGCCGACTTGCACCGGATCTTGCTCAAGCACCGCCACCAACGGGGGGCAATTGACTTCGAAGCCCCGGAAGCGAAGATCATCGTCGACGAGAATGGTCACCCAACCGACATCCAATTACGCGACCGCGGGCTGTCGGAACGGATGATCGAATCCTTCATGCTGGCGGCTAACGAAACGGTGGCCAAGCACTACGATTTGATGCACGTACCATTCCTCTACCGGATCCACGAACACCCGGATACCGAACGGATTAAAAACTTTGCTGAATTCCTCTCCGTTTTCGGGATTAACATGCCGGGGGACCTCGCCAACGTTGAGCCAAAGATGTTGCAAAAGGTGCTTAAGCAAGTTGCCGGCACGCCAGAGGAACAAATGGTCCAAACGATGATGCTGCGCAGTATGCAACAGGCCAAGTACTCCGAAGATGAGCTAAGCCACTTTGGGCTGGGGGCCCAGTACTACACCCACTTTACGTCGCCGATTCGTCGTTACCCGGATACGACCGTTCACCGCTTGATCAAGTGGTACAAGGAAAACGGGACTACCGAAGAGGCCAAGGCCAAGTACCGGGATCGCCTAGCGGAAATTGCTGAACACACCTCAGTGACGGAACGGCGGGGGATTGATACCGAACGCGACGTCGATTCGATGAAAAAGGCTGAGTTTATGGAGGACCACGTGGGCGAGACCTTTGACGCCGTTGTCTCTTCCGTAATGAAGTTTGGCCTCTTCGTTGCCTTGGAGAATACGGTTGAAGGTTTGATTCATATCTCGGTGATGAACGATGACTACTACGAGTACATCGAAAAGCACATGGCCTTGGTCGGCCGGGACCACCACCACATCTTCCAGATTGGTCAACCAGTAAAGGTTAAGCTATTGCGGGTTGATAAGGATCAACGCGAAGTTGACTTCGAGCTGGTGAACGCCGATGAAGCGCCGCTGACTAAGCTGCGGGCACCACGGCAAAATGACCGCCGCAACGGTCGTGGTCGCGGCAACGGTAATGGACGGCGCAATAATAACGGGCGCCGTCACTTCTCCGATGACCACGATCGTGATAACGGGAGTCGTAACACCACCCAGATCAACCGGGGGCAAACTCGTCACCGTGGCGACCGGGATAATAATGGCGACCGCAATCGTCGCCGCAACGGTAACGGACAAAACCGCCGCCACTAG
MTDLKTQILDYLTENAALSFSAEKLARVLSMTSADEFTPLVQALVQLEREGKVEVTDDGEFKLVPQVKEFTGVFHRNPKGFGFVSYDPEMPDIFINPDHTMCALTGDEVAVKILQAGDPTRDQRPEGEITKIITRSYDHVVGEFKNMTMGNFIGEVILKDKKLGSLRFYVTGDGIHPQDNEVVTASIATYPSEDAPEVMTGPALEVIGDKDEPGVDILSVVYAHDVPHEFPKEVLDQANQIPLTVQPEEKVGRPDLTDQPLVTIDSIESKDLDDAVVAWKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKRGTSVYLTDRVIPMLPRRLSNGICSLNPGEERLAMSCEMEIDPQGNIVSHEIFPSVIRSHARMTYKGVNAILEAHDEKTRQEYKELVPMFETMADLHRILLKHRHQRGAIDFEAPEAKIIVDENGHPTDIQLRDRGLSERMIESFMLAANETVAKHYDLMHVPFLYRIHEHPDTERIKNFAEFLSVFGINMPGDLANVEPKMLQKVLKQVAGTPEEQMVQTMMLRSMQQAKYSEDELSHFGLGAQYYTHFTSPIRRYPDTTVHRLIKWYKENGTTEEAKAKYRDRLAEIAEHTSVTERRGIDTERDVDSMKKAEFMEDHVGETFDAVVSSVMKFGLFVALENTVEGLIHISVMNDDYYEYIEKHMALVGRDHHHIFQIGQPVKVKLLRVDKDQREVDFELVNADEAPLTKLRAPRQNDRRNGRGRGNGNGRRNNNGRRHFSDDHDRDNGSRNTTQINRGQTRHRGDRDNNGDRNRRRNGNGQNRRH
GenBank Info
gene - rnr
locus_tag - FAM19471-i1-1.1_001143
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015638655.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribonuclease R
protein_id - extdb:FAM19471-i1-1.1_001143
Gene locus
(click to toggle display options)
Located on scaffold FAM19471-i1-1_scf0020
FAM19471-i1-1.1_001142