genome:
FAM19471-i1-1.1
organism:
FAM19471
old identifier:
FAM19471
species:
Limosilactobacillus fermentum
taxid:
1613
This genome is a representative of
FAM19471.
Metadata
| Key Parameters |
|
| Representative? |
True |
| Contaminated? |
False |
| Sequencing Information |
|
| Sequencing technology |
Illumina |
| Assembly Information |
|
| GC content |
51.5 |
| Longest scaffold |
154742 |
| Assembly size |
2036472 |
| Number of scaffolds |
211 |
| N50 |
34842 |
| Number of gaps |
0 |
| Total Ns |
0 |
| Annotation Information |
|
| Annotations by category |
|
|
# genes with annotation |
# unique annotations |
Browse anntoations |
| EC Number (EC) |
991 |
615 |
link
|
| KEGG gene (KG) |
1884 |
1268 |
link
|
| KEGG reaction (KR) |
1450 |
836 |
link
|
| Gene Ontology (GO) |
26216 |
2408 |
link
|
| Ortholog (OL) |
1837 |
1457 |
link
|
| Gene Code (GC) |
601 |
402 |
link
|
| Gene Product (GP) |
2061 |
1213 |
link
|
| Eggnog Protein (EP) |
1341 |
1162 |
link
|
| Eggnog Ortholog (EO) |
1884 |
1524 |
link
|
| Eggnog Description (ED) |
1793 |
1199 |
link
|
| Subcellular location (SL) |
0 |
0 |
link
|
BUSCO
| BUSCO |
dataset undefined |
| Single-copy |
398 |
| Duplicated |
2 |
| Fragmented |
2 |
| Missing |
0 |
| Complete |
400 |
| Total |
402 |
16S 16S NCBI-db
| taxid |
evalue |
description |
| Limosilactobacillus fermentum |
0.0 |
Lactobacillus fermentum strain NBRC 15885 16S ribosomal RNA, partial sequence |
| Limosilactobacillus fermentum |
0.0 |
Lactobacillus fermentum strain CIP 102980 16S ribosomal RNA, partial sequence |
Limosilactobacillus gorillae (taxid 1450649) |
0.0 |
Lactobacillus gorillae strain KZ01 16S ribosomal RNA, partial sequence |
Limosilactobacillus ingluviei (taxid 148604) |
0.0 |
Lactobacillus ingluviei strain KR3 16S ribosomal RNA, partial sequence |
| Limosilactobacillus fermentum |
0.0 |
Lactobacillus fermentum strain NCDO 1750 16S ribosomal RNA, partial sequence |
Limosilactobacillus gastricus (taxid 227942) |
0.0 |
Lactobacillus gastricus strain Kx156A7 16S ribosomal RNA, partial sequence |
Limosilactobacillus mucosae (taxid 97478) |
0.0 |
Lactobacillus mucosae strain S32 16S ribosomal RNA, partial sequence |
| Limosilactobacillus fermentum |
0.0 |
Lactobacillus fermentum strain CIP 102980 16S ribosomal RNA, partial sequence |
| Limosilactobacillus fermentum |
0.0 |
Lactobacillus fermentum strain NBRC 15885 16S ribosomal RNA, partial sequence |
Limosilactobacillus gorillae (taxid 1450649) |
0.0 |
Lactobacillus gorillae strain KZ01 16S ribosomal RNA, partial sequence |
16S 16S dairydb
| taxid |
confidence |
description |
| Limosilactobacillus fermentum |
58.478597 |
Lactobacillus fermentum |
Download files
- Assembly
- Coding sequences (CDS)
- Custom annotations
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