genome:
FAM19038-p1-1.1
organism:
FAM19038
old identifier:
FAM19038p
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998
This genome is a representative of FAM19038.
Tags
anaerobe
-
osmophile
-
Metadata
| Key Parameters | 
|
|---|
| Representative? | True |
|---|---|
| Contaminated? | False |
| Sequencing Information |
|
|---|
| Sequencing technology | PacBio |
|---|
| Assembly Information |
|
|---|
| GC content | 68.7 |
|---|---|
| Longest scaffold | 2999408 |
| Assembly size | 2999408 |
| Number of scaffolds | 1 |
| N50 | 2999408 |
| Number of gaps | 0 |
| Total Ns | 0 |
| Annotation Information |
|
|---|
| Number of genes | 2686 |
|---|
| Annotations by category |
|
|---|
| # genes with annotation | # unique annotations | Browse anntoations | |
|---|---|---|---|
| EC Number (EC) | 1340 | 799 | link |
| KEGG gene (KG) | 2248 | 1556 | link |
| KEGG reaction (KR) | 1958 | 1170 | link |
| Gene Ontology (GO) | 32059 | 2680 | link |
| Ortholog (OL) | 2349 | 2082 | link |
| Gene Code (GC) | 519 | 422 | link |
| Gene Product (GP) | 2610 | 1497 | link |
| Eggnog Protein (EP) | 1424 | 1299 | link |
| Eggnog Ortholog (EO) | 2372 | 2078 | link |
| Eggnog Description (ED) | 2259 | 1548 | link |
| Subcellular location (SL) | 0 | 0 | link |
BUSCO
| BUSCO | firmicutes_odb9 |
|---|---|
| Single-copy | 639 |
| Duplicated | 1 |
| Fragmented | 1 |
| Missing | 8 |
| Complete | 640 |
| Total | 649 |
16S 16S NCBI-db
| taxid | evalue | description |
|---|---|---|
Acidipropionibacterium microaerophilum (taxid 118367) |
0.0 | Acidipropionibacterium microaerophilum strain M 5 16S ribosomal RNA, partial sequence |
Acidipropionibacterium jensenii (taxid 1749) |
0.0 | Acidipropionibacterium jensenii strain DSM 20535 16S ribosomal RNA, partial sequence |
| Acidipropionibacterium thoenii | 0.0 | Acidipropionibacterium thoenii strain NCFB 568 16S ribosomal RNA, partial sequence |
| Acidipropionibacterium thoenii | 0.0 | Acidipropionibacterium thoenii strain DSM 20276 16S ribosomal RNA, partial sequence |
Clostridium combesii (taxid 39481) |
0.0 | Clostridium combesii strain ATCC 25545 16S ribosomal RNA, partial sequence |
Acidipropionibacterium microaerophilum (taxid 118367) |
0.0 | Acidipropionibacterium microaerophilum strain M 5 16S ribosomal RNA, partial sequence |
Acidipropionibacterium jensenii (taxid 1749) |
0.0 | Acidipropionibacterium jensenii strain DSM 20535 16S ribosomal RNA, partial sequence |
| Acidipropionibacterium thoenii | 0.0 | Acidipropionibacterium thoenii strain NCFB 568 16S ribosomal RNA, partial sequence |
| Acidipropionibacterium thoenii | 0.0 | Acidipropionibacterium thoenii strain DSM 20276 16S ribosomal RNA, partial sequence |
Clostridium combesii (taxid 39481) |
0.0 | Clostridium combesii strain ATCC 25545 16S ribosomal RNA, partial sequence |
Acidipropionibacterium microaerophilum (taxid 118367) |
0.0 | Acidipropionibacterium microaerophilum strain M 5 16S ribosomal RNA, partial sequence |
Acidipropionibacterium jensenii (taxid 1749) |
0.0 | Acidipropionibacterium jensenii strain DSM 20535 16S ribosomal RNA, partial sequence |
| Acidipropionibacterium thoenii | 0.0 | Acidipropionibacterium thoenii strain NCFB 568 16S ribosomal RNA, partial sequence |
| Acidipropionibacterium thoenii | 0.0 | Acidipropionibacterium thoenii strain DSM 20276 16S ribosomal RNA, partial sequence |
Clostridium combesii (taxid 39481) |
0.0 | Clostridium combesii strain ATCC 25545 16S ribosomal RNA, partial sequence |
16S 16S dairydb
| taxid | confidence | description |
|---|---|---|
Acidipropionibacterium jensenii (taxid 1749) |
92.79207 | Acidipropionibacterium jensenii |