genome:
FAM18356-i1-1.1
organism:
FAM18356
old identifier:
FAM18356
species:
Leuconostoc mesenteroides
taxid:
1245
This genome is a representative of
FAM18356.
Metadata
| Key Parameters |
|
| Representative? |
True |
| Contaminated? |
False |
| Sequencing Information |
|
| Sequencing technology |
Illumina |
| Assembly Information |
|
| GC content |
37.8 |
| Longest scaffold |
383178 |
| Assembly size |
1871533 |
| Number of scaffolds |
40 |
| N50 |
96446 |
| Number of gaps |
5 |
| Total Ns |
5 |
| Annotation Information |
|
| Annotations by category |
|
|
# genes with annotation |
# unique annotations |
Browse anntoations |
| EC Number (EC) |
622 |
558 |
link
|
| KEGG gene (KG) |
1164 |
1173 |
link
|
| KEGG reaction (KR) |
461 |
732 |
link
|
| Gene Ontology (GO) |
506 |
2219 |
link
|
| Ortholog (OL) |
1532 |
1305 |
link
|
| Gene Code (GC) |
558 |
350 |
link
|
| Gene Product (GP) |
1765 |
1112 |
link
|
| Eggnog Protein (EP) |
1174 |
1073 |
link
|
| Eggnog Ortholog (EO) |
1650 |
1452 |
link
|
| Eggnog Description (ED) |
1489 |
1134 |
link
|
| Subcellular location (SL) |
0 |
0 |
link
|
BUSCO
| BUSCO |
dataset undefined |
| Single-copy |
388 |
| Duplicated |
2 |
| Fragmented |
5 |
| Missing |
7 |
| Complete |
390 |
| Total |
402 |
16S 16S NCBI-db
| taxid |
evalue |
description |
| Leuconostoc mesenteroides |
0.0 |
Leuconostoc mesenteroides strain ATCC 8293 16S ribosomal RNA, partial sequence |
Leuconostoc mesenteroides subsp. jonggajibkimchii (taxid 2026657) |
0.0 |
Leuconostoc mesenteroides subsp. jonggajibkimchii strain DRC1506 16S ribosomal RNA, complete sequence |
Leuconostoc mesenteroides subsp. dextranicum (taxid 33966) |
0.0 |
Leuconostoc mesenteroides subsp. dextranicum strain NBRC 100495 16S ribosomal RNA, partial sequence |
| Leuconostoc mesenteroides |
0.0 |
Leuconostoc mesenteroides strain JCM 6124 16S ribosomal RNA, partial sequence |
Leuconostoc gasicomitatum (taxid 115778) |
0.0 |
Leuconostoc gelidum subsp. gasicomitatum strain TB 1-10 16S ribosomal RNA, complete sequence |
16S 16S dairydb
| taxid |
confidence |
description |
| Leuconostoc mesenteroides |
96.866331 |
Leuconostoc mesenteroides |
Download files
- Assembly
- Coding sequences (CDS)
- Custom annotations
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