locus tag: FAM19471-i1-1.1_001138 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 tsaE
Gene Product
 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
KEGG reaction
 R11024 ATP:N-acetyl-D-muramate 1-phosphotransferase; N-Acetylmuramate + ATP <=> N-Acetylmuramic acid alpha-1-phosphate + ADP kornec01100 kornec00520
KEGG reaction
 R08968 ATP:N-acetyl-D-glucosamine 1-phosphotransferase; N-Acetyl-D-glucosamine + ATP <=> N-Acetyl-alpha-D-glucosamine 1-phosphate + ADP kornec01100 kornec00520
KEGG reaction
 R00401 alanine racemase; L-Alanine <=> D-Alanine kornec01100 kornec00473
Ortholog
 N0.HOG0000963 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
KEGG gene
 K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] kornec01100 kornec00520
KEGG gene
 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
KEGG gene
 K01775 alr; alanine racemase [EC:5.1.1.1] kornec01100 kornec00473 kornec01502
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0070525 tRNA threonylcarbamoyladenosine metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043412 macromolecule modification
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0040007 growth
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009451 RNA modification
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008033 tRNA processing
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006400 tRNA modification
Gene Ontology
 GO:0006399 tRNA metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0002949 tRNA threonylcarbamoyladenosine modification
Eggnog Protein
 EP:ydiB
Eggnog Ortholog
 EO:1V6CV
Eggnog Description
 ED:Hydrolase
EC Number
 EC:5.1.1.1 alanine racemase; L-alanine racemase kornec01100 kornec00473
EC Number
 EC:2.7.1.221 N-acetylmuramate 1-kinase; amgK (gene name) kornec01100 kornec00520

Occurs in the following pathway maps:

Pathway Description
kornec00473 D-Alanine metabolism
kornec00520 Amino sugar and nucleotide sugar metabolism
kornec01100 Metabolic pathways
kornec01502 Vancomycin resistance

Sequences

Nucleotide sequence (GC-content: 52.3 %):

Download Copy to clipboard
ATGAAACAATTTACCTTTAATACTCCAGAACAAACAAAAGAACTCGGCCAAATAATCGCGTCGGGGTTGCGGGCCGGGGACGTGCTCGTTTTAAACGGCGACCTCGGGGCCGGGAAAACCACTTTCACCAAGGGGCTGGCCAAGGGCTTAGGCATCGATGAGGTGATTAAAAGCCCCACCTTTACCATTATTCGTGAATACCAAGGGGGGCGGCTACCGCTTTACCACATGGACGTCTACCGGCTGGAAAACGGCGGGGCAGAGGACCTGGGTTTGGATGAATACTTTGACGGTGATGGGGTTAGCGTGGTGGAGTGGGCCCAATTTGCGGCTGACGAATTACCAGCTGATTACCTAGCCCTAACCTTTACGCGCACCGATCAAGATAACCAACGGAAAGTACAGTTAGACCCCCATGGCGAACACTTTACTTCCCTAGTGGAGGCATTGTAA

Protein sequence:

Download Copy to clipboard
MKQFTFNTPEQTKELGQIIASGLRAGDVLVLNGDLGAGKTTFTKGLAKGLGIDEVIKSPTFTIIREYQGGRLPLYHMDVYRLENGGAEDLGLDEYFDGDGVSVVEWAQFAADELPADYLALTFTRTDQDNQRKVQLDPHGEHFTSLVEAL

GenBank Info

gene - tsaE
locus_tag - FAM19471-i1-1.1_001138
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003682659.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
protein_id - extdb:FAM19471-i1-1.1_001138

Gene locus (click to toggle display options) expand

Located on scaffold FAM19471-i1-1_scf0020

Update range to 10000 bp
FAM19471-i1-1.1_001137
FAM19471-i1-1.1_001139