update range to 10000 bp
locus tag: FAM19471-i1-1.1_001003 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rpiA
Gene Product
 ribose-5-phosphate isomerase RpiA
KEGG reaction
 R01737 ATP:D-Gluconate 6-phosphotransferase; ATP + D-Gluconic acid <=> ADP + 6-Phospho-D-gluconate kornec01200kornec01100kornec00030kornec01110kornec01120
KEGG reaction
 R01056 D-ribose-5-phosphate aldose-ketose-isomerase; D-Ribose 5-phosphate <=> D-Ribulose 5-phosphate kornec01230kornec01200kornec01100kornec00030kornec01110kornec01120kornec00710
Ortholog
 N0.HOG0000777 ribose-5-phosphate isomerase RpiA
KEGG gene
 K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] kornec01230kornec01200kornec01100kornec00030kornec01110kornec01120kornec00710
KEGG gene
 K00851 E2.7.1.12, gntK, idnK; gluconokinase [EC:2.7.1.12] kornec01200kornec01100kornec00030kornec01110kornec01120
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:1901135 carbohydrate derivative metabolic process
Gene Ontology
 GO:0072524 pyridine-containing compound metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0055086 nucleobase-containing small molecule metabolic process
Gene Ontology
 GO:0051186 obsolete cofactor metabolic process
Gene Ontology
 GO:0051156 glucose 6-phosphate metabolic process
Gene Ontology
 GO:0046496 nicotinamide nucleotide metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019693 ribose phosphate metabolic process
Gene Ontology
 GO:0019682 glyceraldehyde-3-phosphate metabolic process
Gene Ontology
 GO:0019637 organophosphate metabolic process
Gene Ontology
 GO:0019362 pyridine nucleotide metabolic process
Gene Ontology
 GO:0019321 pentose metabolic process
Gene Ontology
 GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses
Gene Ontology
 GO:0016860 intramolecular oxidoreductase activity
Gene Ontology
 GO:0016853 isomerase activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009117 nucleotide metabolic process
Gene Ontology
 GO:0009052 pentose-phosphate shunt, non-oxidative branch
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006796 phosphate-containing compound metabolic process
Gene Ontology
 GO:0006793 phosphorus metabolic process
Gene Ontology
 GO:0006753 nucleoside phosphate metabolic process
Gene Ontology
 GO:0006739 NADP metabolic process
Gene Ontology
 GO:0006733 obsolete oxidoreduction coenzyme metabolic process
Gene Ontology
 GO:0006732 obsolete coenzyme metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0006098 pentose-phosphate shunt
Gene Ontology
 GO:0006081 cellular aldehyde metabolic process
Gene Ontology
 GO:0006014 D-ribose metabolic process
Gene Ontology
 GO:0005996 monosaccharide metabolic process
Gene Ontology
 GO:0005975 carbohydrate metabolic process
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0004751 ribose-5-phosphate isomerase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:rpiA
Eggnog Ortholog
 EO:1V1DB
Eggnog Description
 ED:Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
EC Number
 EC:5.3.1.6 ribose-5-phosphate isomerase; phosphopentosisomerase; phosphoriboisomerase; ribose phosphate isomerase; 5-phosphoribose isomerase; D-ribose 5-phosphate isomerase; D-ribose-5-phosphate ketol-isomerase kornec01100kornec00030kornec00051kornec01110kornec01120kornec00710
EC Number
 EC:2.7.1.12 gluconokinase; gluconokinase (phosphorylating); gluconate kinase kornec01100kornec00030kornec01110kornec01120

Occurs in the following pathway maps:

Pathway Description
kornec00030 Pentose phosphate pathway
kornec00051 Fructose and mannose metabolism
kornec00710 Carbon fixation in photosynthetic organisms
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01120 Microbial metabolism in diverse environments
kornec01200 Carbon metabolism
kornec01230 Biosynthesis of amino acids

Sequences

Nucleotide sequence (GC-content: 49.0 %):

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ATGGATCAAAATGAATTAAAAGCACTCGTTGGAAAAGAAGCCGTTAAGTACATTGAAGATGGTATGATCGTTGGGTTGGGGACCGGGTCAACCGTTCGCTTCATGGTGGATGCCCTAGGTGAACGAGTTAAAAACGAAGGTTTGAAGATCGTTGGGGTGACTACTTCACGTCGGACAACCAAGCAAGCAACTGAACTGGGGATCACGATCAAAGATATTGATGAAGTTGATCACGTTGACCTTACCATTGATGGTGCCGATGAAGTGAGCAACGATTTCCAAGGTATTAAGGGGGGCGGGGGCGCCCTGCTTTGGGAAAAGGTCGTTAACGATGCCTCAACCAAGAATATTTGGATTGTTGACGAATCAAAGTTAGTTGATAAGCTTGGCGACTTTGGGGTACCAGTAGAAGTAATCCCGTTTGGGGCGGCCCACGTTTTCCGCAAGTTTGAAAAGAAGGGCTACCAACCGCAGTGGCGGATGGACGGGGATGACCGTTACCTGACTGACGAAAAGAACTACATTATCGACCTCAAGATGGGGAAGATTGATGCCCCGAAGACCCTAGCTGAGGACCTTATTCACACCGTGGGCGTTGTTGAACACGGTCTCTTCTTGGATCGGGTCAACGAAGTAATCGTTGGTCGCCAAGACGGCCCGGAAGTTCTACACGCGCGATAA

Protein sequence:

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MDQNELKALVGKEAVKYIEDGMIVGLGTGSTVRFMVDALGERVKNEGLKIVGVTTSRRTTKQATELGITIKDIDEVDHVDLTIDGADEVSNDFQGIKGGGGALLWEKVVNDASTKNIWIVDESKLVDKLGDFGVPVEVIPFGAAHVFRKFEKKGYQPQWRMDGDDRYLTDEKNYIIDLKMGKIDAPKTLAEDLIHTVGVVEHGLFLDRVNEVIVGRQDGPEVLHAR

GenBank Info

gene - rpiA
locus_tag - FAM19471-i1-1.1_001003
EC_number - 5.3.1.6
inference - COORDINATES: similar to AA sequence:RefSeq:WP_011667345.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribose-5-phosphate isomerase RpiA
protein_id - extdb:FAM19471-i1-1.1_001003

Gene Locus

Located on scaffold FAM19471-i1-1_scf0016

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM19471-i1-1.1_001002
FAM19471-i1-1.1_001004