locus tag: FAM19471-i1-1.1_000922 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 PDZ domain-containing protein
Ortholog
 N0.HOG0000612 PDZ domain-containing protein
KEGG gene
 K04771 degP, htrA; serine protease Do [EC:3.4.21.107] kornec01503 kornec02020
KEGG gene
 K04691 hhoB, degS; serine protease DegS [EC:3.4.21.-]
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0009628 response to abiotic stimulus
Gene Ontology
 GO:0009266 response to temperature stimulus
Gene Ontology
 GO:0008150 biological_process
Eggnog Protein
 EP:htrA
Eggnog Ortholog
 EO:1TRM8
Eggnog Description
 ED:serine protease
EC Number
 EC:3.4.21.107 peptidase Do; DegP; DegP protease; HtrA; high temperature requirement protease A; HrtA heat shock protein; protease Do; Do protease

Occurs in the following pathway maps:

Pathway Description
kornec01503 Cationic antimicrobial peptide (CAMP) resistance
kornec02020 Two-component system

Sequences

Nucleotide sequence (GC-content: 56.7 %):

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ATGAAGAAGCACTTAGCACCACAGCAGCGCCGTTTTTGGGGGAAGGTCATCCTCGTCGGCGTCTTGGCCGGTCTCCTTGGTGGGGGGGCGGCCCTCGGGATTAACTCCGCCATCAGTACCTACCGCAACTACGCCACCACGAAGGTGCCCGCGGGCTCGTCCAAGAGCGGCGGCACCTCGGTTTCCAAGAATAAGGCCAGCCTGACCAACGAAACCACTAAGGCCTATAACGCCACTAAGAACGCGGTGGTCTCGGTTATCAATAAGCAGGCCACGTCTAGCAGTGACTCCTTGTACGGCAACGTCACCGACGGGTCAACTAGCTCCAGTTCTGGCAGCTTAGAAACGGCTAGCGAGGGCTCCGGGGTGATCTACAAGAAGAGCGGCAACGTTGCCTACGTTGTTACTAACAACCACGTCGTCTCCGGCTCCAGTGAAATCCAAGTTATCTTGAGTAATGGCAAGACCGTCGACGCCCAAATCGTCGGGACCGATGAAACGACCGACCTGGCCGTCTTGAAGATTAACGCCGCCAACGTAACGACGGTGGCCACCTTTGGCAACTCTAACGACATTGCGGCCGGCCAGGACGTGATCGCAATTGGGTCACCGATGGGTTCCGAGTACGCCAACACGGTTACCAAGGGGATCATTTCCGCCACCAAGCGGACGGTCAAGGCCAGCGACAGCTCGGTGGCCACGACCGTTATCCAAACCGACGCCGCCATTAACTCCGGTAACTCGGGGGGGCCACTGGTCAACATGGCCGGCCAGGTGATCGGGATCAACTCGATGAAGCTAGCCTCCAGCACCGATGGGACCTCGGTGGAGGGGATGGGCTTTTCCATCCCGAGTAACGAAGTGGTCCGGGTCATCAACCAGTTAATCAAAAACGGCAAGATCACCCGGCCAATGCTAGGGGTGTCACTCTTGGACCTGTCCGACGTTTCTAGTAGTCAACAGCAGTCGGTCTTAAACCTGCCAACCAGCGTAACCAAGGGGGTGGTGGTGATGAAGGTGGAAAGTGGCTACCCCGCCGCCAACACCGGCTTACAACAATACGATGTGATTACCGCCATTAACGGCAAGAAGGTTACCGATGCCGGTGACTTAAAGACGGTGCTCTACAAGTACAAGGTCGGCGACACGGTCACTTTGACCTACTACCGTGACGGAAGCAAGAAAACGGCCAAGGTAGAATTAAACAAGGAGGCTAGCTCGTCGACCACGACCAGCAGTTCTTCTAGTGATGACGCAACCAGCGCCGAGTAA

Protein sequence:

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MKKHLAPQQRRFWGKVILVGVLAGLLGGGAALGINSAISTYRNYATTKVPAGSSKSGGTSVSKNKASLTNETTKAYNATKNAVVSVINKQATSSSDSLYGNVTDGSTSSSSGSLETASEGSGVIYKKSGNVAYVVTNNHVVSGSSEIQVILSNGKTVDAQIVGTDETTDLAVLKINAANVTTVATFGNSNDIAAGQDVIAIGSPMGSEYANTVTKGIISATKRTVKASDSSVATTVIQTDAAINSGNSGGPLVNMAGQVIGINSMKLASSTDGTSVEGMGFSIPSNEVVRVINQLIKNGKITRPMLGVSLLDLSDVSSSQQQSVLNLPTSVTKGVVVMKVESGYPAANTGLQQYDVITAINGKKVTDAGDLKTVLYKYKVGDTVTLTYYRDGSKKTAKVELNKEASSSTTTSSSSSDDATSAE

GenBank Info

locus_tag - FAM19471-i1-1.1_000922
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012390660.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - PDZ domain-containing protein
protein_id - extdb:FAM19471-i1-1.1_000922

Gene locus (click to toggle display options) expand

Located on scaffold FAM19471-i1-1_scf0014

Update range to 10000 bp
FAM19471-i1-1.1_000921
FAM19471-i1-1.1_000923