locus tag: FAM19471-i1-1.1_000907 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0001309 ATP-dependent helicase
KEGG gene
 K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:3.1.-.- 3.6.4.12]
KEGG gene
 K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140097 catalytic activity, acting on DNA
Gene Ontology
 GO:0090305 nucleic acid phosphodiester bond hydrolysis
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071840 cellular component organization or biogenesis
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0071103 DNA conformation change
Gene Ontology
 GO:0070035 obsolete purine NTP-dependent helicase activity
Gene Ontology
 GO:0051716 cellular response to stimulus
Gene Ontology
 GO:0051276 chromosome organization
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042623 -
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0033554 cellular response to stress
Gene Ontology
 GO:0032508 DNA duplex unwinding
Gene Ontology
 GO:0032392 DNA geometric change
Gene Ontology
 GO:0017111 nucleoside-triphosphatase activity
Gene Ontology
 GO:0016887 ATPase activity
Gene Ontology
 GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Gene Ontology
 GO:0016817 hydrolase activity, acting on acid anhydrides
Gene Ontology
 GO:0016788 hydrolase activity, acting on ester bonds
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0016462 pyrophosphatase activity
Gene Ontology
 GO:0016043 cellular component organization
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008094 DNA-dependent ATPase activity
Gene Ontology
 GO:0008026 -
Gene Ontology
 GO:0006996 organelle organization
Gene Ontology
 GO:0006974 cellular response to DNA damage stimulus
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006310 DNA recombination
Gene Ontology
 GO:0006302 double-strand break repair
Gene Ontology
 GO:0006281 DNA repair
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0004519 endonuclease activity
Gene Ontology
 GO:0004518 nuclease activity
Gene Ontology
 GO:0004386 helicase activity
Gene Ontology
 GO:0004003 -
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003678 DNA helicase activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:rexB
Eggnog Ortholog
 EO:1TQJW
Eggnog Description
 ED:The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent
EC Number
 EC:3.6.4.12 DNA helicase; 3' to 5' DNA helicase; 3'-5' DNA helicase; 3'-5' PfDH; 5' to 3' DNA helicase; AvDH1; BACH1 helicase; BcMCM; BLM protein; BRCA1-associated C-terminal helicase; CeWRN-1; Dbp9p; DmRECQ5; DNA helicase 120; DNA helicase A; DNA helicase E; DNA helicase II; DNA helicase III; DNA helicase RECQL5beta; DNA helicase VI; dnaB; DnaB helicase E1; helicase HDH IV; Hel E; helicase DnaB; helicase domain of bacteriophage T7 gene 4 protein helicase; PcrA helicase; UvrD; hHcsA; Hmi1p; hPif1; MCM helicase; MCM protein; MER3 helicase; MER3 protein; MPH1; PcrA; PcrA helicase; PDH120; PfDH A; Pfh1p; PIF1
EC Number
 EC:3.1.21.3 type I site-specific deoxyribonuclease; type I restriction enzyme; deoxyribonuclease (ATP- and S-adenosyl-L-methionine-dependent); restriction-modification system; deoxyribonuclease (adenosine triphosphate-hydrolyzing); adenosine triphosphate-dependent deoxyribonuclease; ATP-dependent DNase; type 1 site-specific deoxyribonuclease
Gene Product
 ATP-dependent helicase

Sequences

Nucleotide sequence (GC-content: 58.2 %):

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ATGGCGACCTTACAATTTGTTTTGGGGAGTGCGTCCTTTGACCACCAGCAAGTGATGCTCGATCGCTTGGCGGCTCAGTACCAGCAAGCACCCAATGATACCTACCTTTACTTAGTGCCCAACCACGTTAAGTTCACCACCGAAGTAGCCGTTTTAAAGGGGCTTAAAAAGCGGTTGAAGCAAACCGGTAATTACGCCCAGGCTAACGTGGCGGTCCTGTCCTTTTCGCGCTTGGGGTGGTTTTTGTGTAAGGACGACCCCGATTACCAAAAGCCCCGCCTTTCCAACGTGGGGATGGCGATGGTGGTCGCCAAGATTATTCGGGAACTCAAGGCAGAATCCCCCGACCTTTTGAAGATGTTTCGGGGCGAAAGCGAACGCCAGGGCTTTGCCACGGCGGTGACCAAGCAGCTGGTGGAACTACAAAACGCCAATATTCAACCGGCCGACCTGGCGCCCGATCAGGAAACCGGGATTATTAAGCGGGCCCTGGCTAGTCAGGCGGGGGGTGGCCGGGCCAGTCAATCGACGGTCTTTACCGACAAGATGACCGTCCTGTACGAAATTTACCGGCGCTTTGAGGCGGCGGTCACGACCCACGTCACGGCGCCGGACCGGTCAGCGATGCTCTTAAACCACCTCGAAGCCGCCGACCTATCAACGACCCACGTTTACCTTGATCGCTTTGCCGGTGAATTTAGCGCCCAGGAACAGTTGATTGTCGACGCCCTGATTCAACGGGCTGCCGACACCACGGTTTCTTTGATCCTCGACCGGGATTACCGGGGACGGGAGTTGCCGAGTCAAAACAACCTCTATTACCGCTCGGCCAAGCAGTACCAGGACTTATTGAACCTCGCCACTCAGCAGGTGGGCGTGGATGTGTTAGACCCGATTGTTTTGAATCAGCCGAACCAACGACGGGTTAGCGACGCCTTGGTGGGGGTCGAAGAGTGGATGGAAGCAGACGCCCGCTTCGCTCTGCCAGACAGGCTGCCGGCCCCGACCGACCAAGTAGGCTTTTTCACCGCCCCAACCCGGGTGGCCGAACTCAACCGGGTCGCCACCAAAATTCGCCAGCTCGTTGCCACCGGTCAGTACCGCTACCGGGACTTTTTAGTGGTTACGAGGCACCTGGACGGCTACCAAACGATGCTAGAACCGATCTTTAGCCGCCACCAAATTCCGGTCTTCAACGATAACCAGCGCCCAATGGCGACCTCGCCGCTAGCGACCTTCACCGCCGCCTTGTTCAAGGTCTTAAAGGACTACTACCAAGAAGCCGACGTGATGGAGTTGTTAAAGACCGGCCTCTTGGTTCCCGAGACGCCGGAAGAGCTCCAACAGGAGGGGCGTGCGAAGCGAAACCCCAACACCTTCATGACCGCCGTCTACCGGACCGAAAACTACTGCCTGAAGTTCGGCAAGGGGGGGCGGTCGTGGTTTGACGAGCGGCCGTGGCGACTGGAAGGAGAACAACCAGAAAGCGATGCGCTCAAGCGCCAAAACGCCCAGATTAACTGGGTCAAAAATTACATCAAAGACGAATTGGCCCCGGCCCTGGCCGACCTACAAACGGCCACTACCGGGCGGGAGTTAGCCACCAAGTTCTACCAGTTCCTCTTGGATCAAGGGGTCCGTCACCAACTTTATTCCTGGGCCCACCAAGCCCAAGAAAGCGGGCAGTTAACCCAGCTGCGCGACGTTCAGCAAATTTGGCAGACCTTTGGCACCCTCTTGGACGAGTACGTAACCATCCTTGGCGACCAGGTGGCCCCGACCGAGCAGCCGGGACAGTTGGTGGCCGAGTTTGCCGACCTCATGAACGCCGGTTTTAACGCCGGGCGCTACGCCCAAATCCCGTCGACTTTGGATCAAGTGTTGGTTTCGGAAAGCGGGATGATCCAGGACAACCAGCGCAAGGTCCTCTTCATCATGGGGGCGACCGATGACGTGATGCCGGAAGTCAAGGCCAGCGAGGGGCTCTTATCCGACCCCGACCGGGAACTTTTGAAGCGGGGCTTAAACGACGACCAGTTCCTGCCCATCAGCGGGACCGACCAGATCAACAACGAGCCCTTCTTAAACTACCTGAGCATGCTGTCGGTAACCGAGCGCCTCTACATGAGCGCCCCCCTGATGAGCAGCGACGACAGTGAGTTAACCCTCTCCCCGTACCTGAAGGGCTTGGCCCGTCACTTCAACCAGTGGGATGACCAAAACAACGCCCCGACCACCGACTTGCCAGACCGGCCGAACCCGCGGGCAAGTGAAGACGACGTGTGGTCCTTTGTGGCGGCGCCGGCCGTGACGATGGGGAACCTGATTGAAGTGGAGCGCCTGAGTAAGGACACCGGCCGTAAGCTGACTAGTGCCTGGCGGGACGTGGCCAGGGCCCTAACCCGCCACGACGAGGGTTTGACGGGGCGGTTAAACGACATCCGGGATGGCCAGTACGCCAAAAACGAGGCGGTGCCACTGCAACCGGAACTGGCGGCCCGCTTGTACACCACTAACCGCCAGGGCCAAGTCACCAACCAGTTGACGGCTTCGATTAGCCAGCTGGAGAAGTTCTACCAAAACCCGTACGACTACTTCTTGCGTTACGGTTTGCACCTGAAGAAGCGCGACGAATTAGAGGTCTCCAGCGACAAGTCCGGGACCTTAAACCACGACGCCCTGGCCTTCTTTGTCCAAAGCGTGATCGACGAACCGGACCTGCAGCTGGCCGACTTGGTTAAAGAAGAGCACCAAGGGCGCCAAGCCGAGTTGATTGACCAAGCCTTTGAGCAGGCCATGAACCAACAAGAGGAGTTGCGGGAATTGGCGGCCAATAACAGCCGGGTCAACTTGCAACTACAGGTGGCCAAGCAGTTGATTACCACCATGGCCAAGACCCTGTGCCTGCAAGCAACCCAGACCGACGCCCAACCAGTGGCGGTTGAAAAGGCCTTTGGGCAGGCGGATTGGACCGGGGAAAGCCAAGCCGCCGAGTTACCAGCGTTAACCTTTGACCTGACCGGGGCGGGGCTCGGTGAGGGCGCCAAGGTCAGCCTGCGGGGGCGGATTGACCGCTTAGACGAGTTGAAACTGGGCGAGCAAACCTACCAGCTGGTGGTTGATTACAAGTCCTACAACAAGGCGTTTGACTTGGTCGACGCCTACGCCGGCCAGGCCCTGCAAATGCTGGCCTACCTCAACGCGTTACAGGCGGCCAACCCGGGCGAGCAACTACTGGGGAGCCTGTACCTGCGTTTGTACGTCCCGACCGTTGACGCCGGCAAGGAGGGGACCGCCGAGGAGCTAAAAGAGCACCTCTACCAGGGGATCACGATTAACGATGACGCCGTCTTGGCCGCCCTCGATCACGGGCTTGGTGAAAAGGGTGCCACCCTGTTAAGCATCAAAAAGAAGAGTAAAAAAGACACCAGCCGCTTTAAGGTTAGTGCCGACGATCAATTCAGCGCTAAGGCGGGCTCCAACCTGGTCTCACCAACCGATTTGAAGCGCCTGATGGACCACAACGCCGAACTGATTAAGGAAGCCGCCGTTCAGATCCTGCAGGGCCAAAACGAGATTAGGCCGTACCGGCGCCAAGTCGGCACCACCGCGGAGACCGGTCTGGCCTTTAGCGACTTCTTAGACGTTTCCCGCTTCGATCAGGCCCTGGATGACTACAAGGAAATCGAGCTGACCGACGCCGACGTGGAAGCAAAGTTTGAACAAGAGGAGGAATAG

Protein sequence:

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MATLQFVLGSASFDHQQVMLDRLAAQYQQAPNDTYLYLVPNHVKFTTEVAVLKGLKKRLKQTGNYAQANVAVLSFSRLGWFLCKDDPDYQKPRLSNVGMAMVVAKIIRELKAESPDLLKMFRGESERQGFATAVTKQLVELQNANIQPADLAPDQETGIIKRALASQAGGGRASQSTVFTDKMTVLYEIYRRFEAAVTTHVTAPDRSAMLLNHLEAADLSTTHVYLDRFAGEFSAQEQLIVDALIQRAADTTVSLILDRDYRGRELPSQNNLYYRSAKQYQDLLNLATQQVGVDVLDPIVLNQPNQRRVSDALVGVEEWMEADARFALPDRLPAPTDQVGFFTAPTRVAELNRVATKIRQLVATGQYRYRDFLVVTRHLDGYQTMLEPIFSRHQIPVFNDNQRPMATSPLATFTAALFKVLKDYYQEADVMELLKTGLLVPETPEELQQEGRAKRNPNTFMTAVYRTENYCLKFGKGGRSWFDERPWRLEGEQPESDALKRQNAQINWVKNYIKDELAPALADLQTATTGRELATKFYQFLLDQGVRHQLYSWAHQAQESGQLTQLRDVQQIWQTFGTLLDEYVTILGDQVAPTEQPGQLVAEFADLMNAGFNAGRYAQIPSTLDQVLVSESGMIQDNQRKVLFIMGATDDVMPEVKASEGLLSDPDRELLKRGLNDDQFLPISGTDQINNEPFLNYLSMLSVTERLYMSAPLMSSDDSELTLSPYLKGLARHFNQWDDQNNAPTTDLPDRPNPRASEDDVWSFVAAPAVTMGNLIEVERLSKDTGRKLTSAWRDVARALTRHDEGLTGRLNDIRDGQYAKNEAVPLQPELAARLYTTNRQGQVTNQLTASISQLEKFYQNPYDYFLRYGLHLKKRDELEVSSDKSGTLNHDALAFFVQSVIDEPDLQLADLVKEEHQGRQAELIDQAFEQAMNQQEELRELAANNSRVNLQLQVAKQLITTMAKTLCLQATQTDAQPVAVEKAFGQADWTGESQAAELPALTFDLTGAGLGEGAKVSLRGRIDRLDELKLGEQTYQLVVDYKSYNKAFDLVDAYAGQALQMLAYLNALQAANPGEQLLGSLYLRLYVPTVDAGKEGTAEELKEHLYQGITINDDAVLAALDHGLGEKGATLLSIKKKSKKDTSRFKVSADDQFSAKAGSNLVSPTDLKRLMDHNAELIKEAAVQILQGQNEIRPYRRQVGTTAETGLAFSDFLDVSRFDQALDDYKEIELTDADVEAKFEQEEE

GenBank Info

locus_tag - FAM19471-i1-1.1_000907
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003685668.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ATP-dependent helicase
protein_id - extdb:FAM19471-i1-1.1_000907

Gene locus (click to toggle display options) expand

Located on scaffold FAM19471-i1-1_scf0014

Update range to 10000 bp
FAM19471-i1-1.1_000906
FAM19471-i1-1.1_000908