locus tag: FAM19038-p1-1.1_002573 genome: FAM19038-p1-1.1
species: Acidipropionibacterium thoenii DSM 20276 taxid: 1122998

Annotations

Type Name Description Pathways
KEGG reaction
 R00025 ethylnitronate:oxygen 2-oxidoreductase (nitrite-forming); Ethylnitronate + Oxygen + Reduced FMN <=> Acetaldehyde + Nitrite + FMN + H2O kornec01100 kornec00910
Ortholog
 N0.HOG0001329 16S rRNA (uracil(1498)-N(3))-methyltransferase
KEGG gene
 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
KEGG gene
 K00459 ncd2, npd; nitronate monooxygenase [EC:1.13.12.16] kornec01100 kornec00910
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140102 catalytic activity, acting on a rRNA
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071840 cellular component organization or biogenesis
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0070475 rRNA base methylation
Gene Ontology
 GO:0070042 rRNA (uridine-N3-)-methyltransferase activity
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0044085 cellular component biogenesis
Gene Ontology
 GO:0043414 macromolecule methylation
Gene Ontology
 GO:0043412 macromolecule modification
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042254 ribosome biogenesis
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0032259 methylation
Gene Ontology
 GO:0031167 rRNA methylation
Gene Ontology
 GO:0022613 ribonucleoprotein complex biogenesis
Gene Ontology
 GO:0016741 transferase activity, transferring one-carbon groups
Gene Ontology
 GO:0016740 transferase activity
Gene Ontology
 GO:0016436 rRNA (uridine) methyltransferase activity
Gene Ontology
 GO:0016072 rRNA metabolic process
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009451 RNA modification
Gene Ontology
 GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
Gene Ontology
 GO:0008649 rRNA methyltransferase activity
Gene Ontology
 GO:0008173 RNA methyltransferase activity
Gene Ontology
 GO:0008170 N-methyltransferase activity
Gene Ontology
 GO:0008168 methyltransferase activity
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006364 rRNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0001510 RNA methylation
Gene Ontology
 GO:0000154 rRNA modification
Eggnog Protein
 EP:rsmE
Eggnog Ortholog
 EO:2GTKX
Eggnog Description
 ED:Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
EC Number
 EC:2.1.1.193 16S rRNA (uracil1498-N3)-methyltransferase; DUF558 protein; YggJ; RsmE; m3U1498 specific methyltransferase
EC Number
 EC:1.13.12.16 nitronate monooxygenase; NMO; 2-nitropropane dioxygenase (incorrect) kornec01100 kornec00910
Gene Product
 16S rRNA (uracil(1498)-N(3))-methyltransferase

Occurs in the following pathway maps:

Pathway Description
kornec00910 Nitrogen metabolism
kornec01100 Metabolic pathways

Sequences

Nucleotide sequence (GC-content: 71.5 %):

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ATGAGCAATCCCTGCTTCATCGCTGAGATCGGTGACGCCGGTCCGGGCGACATCGTCGAGATCACCGGGTCCGAGGGCCATCACGCCGCAACCGTGCGGCGGATCGAGGTGGGCGAGTCGGTGCTGGTGACCGACGGCCACGGCACCGCCGTGCGGGGACCGGCGGTCGAGGTGAGCCGCAGTGCGGTGCGGGTGGAGGTGGTCGACAGACTCTCCAGCCCCGACCACCCGATTCGCTGGGTGGCCGTCCAGGCCCTCATCAAGGGGCCGCGCGCCGACCTGGTCGTCGAGACCCTCACCGAGCTCGGCGTCGACGAGATCATCGCTTGGCAGGCATCCCGGTCGATCGTCCGGTGGGGGGCCGAGAAGCGCGAGAAGGCCTTGGACCGCTGGCGCAGCACCGCCCGCGAGGCCACCAAGCAGTCGCGCCGGTTCCGGGTGCCGACGGTGACGATGGCCAGCACCGCCCAGCTGCGCTCCCGGATCTCGACGGCCCAGGGGGCCTTCGTCCTCCACGAGAGCGCCACCGACCCGATCCGCCCGTCCGACCTGCCCGCCTCCGGAGAGGTGATAATGGTGGTCGGCCCGGAGGGCGGCATCACCCCCGAGGAGCTGTCAGCTTTTACCGGGGCCGGTGCGGTCCCGGTGCTGGTGGCCGACGCCGTCCTGCGCGCCTCCACCGCACCGGTAGTCGGACTGGCCCAGCTGCAGGCTCTCAGCCAGCTGTGA

Protein sequence:

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MSNPCFIAEIGDAGPGDIVEITGSEGHHAATVRRIEVGESVLVTDGHGTAVRGPAVEVSRSAVRVEVVDRLSSPDHPIRWVAVQALIKGPRADLVVETLTELGVDEIIAWQASRSIVRWGAEKREKALDRWRSTAREATKQSRRFRVPTVTMASTAQLRSRISTAQGAFVLHESATDPIRPSDLPASGEVIMVVGPEGGITPEELSAFTGAGAVPVLVADAVLRASTAPVVGLAQLQALSQL

GenBank Info

locus_tag - FAM19038-p1-1.1_002573
EC_number - 2.1.1.193
inference - COORDINATES: similar to AA sequence:RefSeq:WP_002527488.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 16S rRNA (uracil(1498)-N(3))-methyltransferase
protein_id - extdb:FAM19038-p1-1.1_002573

Gene locus (click to toggle display options) expand

Located on scaffold FAM19038-p1-1_scf0001

Update range to 10000 bp
FAM19038-p1-1.1_002572
FAM19038-p1-1.1_002574