Alignment method
Clustal Omega
MAFFT
Muscle
Alignment sequence type
Protein
DNA
Tree method
None
IQ-Tree
RAxML-NG
Tree substitution model
Additional Parameters
(see IQ-TREE command reference for possible parameters)
(see RAxML-NG wiki for possible parameters)
Reload multiple sequence alignment
Set range around gene locus
update range to
10000
bp
Colorize genes based on...
EC Number (EC)
KEGG gene (KG)
KEGG reaction (KR)
Gene Ontology (GO)
Ortholog (OL)
Gene Code (GC)
Gene Product (GP)
Eggnog Protein (EP)
Eggnog Ortholog (EO)
Eggnog Description (ED)
Subcellular location (SL)
Highlight only selected gene
Render method
HTML Bokeh
SVG
SVG Figure width
SVG Figure height
Reload Gene Locus
Version: 2024.12.02-23-release
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